NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10045942

Scaffold Ga0214917_10045942


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10045942 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3021
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018914Metagenome232N
F066571Metagenome126N
F068576Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100459425F018914GGAGGMAKQDKFAVLRKWVAESQTLMGLDHWEVTIVEAAADVDAWADIEPHAQQPTADLRVAFDFWKQEPEKQRLILTHELLHLVLARYARISENLEESLGKLAWAVIEPQLEDGEERTIEHLARIIAPYLSLPAFPKT
Ga0214917_100459426F066571AGGMRYDLTATARPYGVLPSLALPVVSSHRQGLTWGSADARTTIMAIAGQRGTSGATPLLLHHYWRANG
Ga0214917_100459427F068576N/AEGSEKAVDKQEQSHRPKSSRVLSTRAARQRRTASDNRGVPIEQRDFQQACAAWSLKLGVKLNALFNLMPQYGKSIHWARERYYGGTFVTDADLYWVKSRIDDQPDHSISAKMQRYAAAVDLMCRVCAGDEDTTPSCWDQTCPLRSVSPLPLRVIK

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