Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10045613 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10045613 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3038
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3038

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010983	Metagenome / Metatranscriptome	296	Y
F033721	Metagenome / Metatranscriptome	176	Y
F057984	Metagenome / Metatranscriptome	135	N
F091592	Metagenome	107	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100456132	F057984	AGGA	MDGLGKIQILAERKVEMVELDIEVDDKTRDTVCHAALREITSDGDALFNYGFSQAIKRFIQTKGKKCTPKKSSSKKRSRR
Ga0214917_100456133	F091592	GGA	MISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNQIGRLSDCNCYRDVKEVRSLVRDIKNGTVLFWCKVAGVRIDQATLNRVIKRGVGNVN
Ga0214917_100456134	F102824	AGG	MTPVRVQHEEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFDDKGRAQDAADLWNAYALWCKERSGKRKRR
Ga0214917_100456136	F033721	AGGA	MRWIKKEPDEEGKPEWAVYIDNVGEGNEEEWSHFDTYKTRDDAVQACWHFTWEDYDCRDK
Ga0214917_100456138	F010983	N/A	LPSVTSVQGILHKEQLVSWRIEQAIMSALTLPREEGEDLGEYAKRVVKDSKEQTTKAAEHGSLMHQCMENILLGRAVSKDETLAPYIKTFKKWSEENVEKTYWCEKSLVGPGYAGRCDAYVRLKGIGDAIIDLKNRKINKKYNTPPFYPTDAQQLWAYRNASENPKCACVSVVLASNDPEYIKHHQWDEDELYQAGIAFCAMQKVWAWVKEYTPPGMKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10045613

Overview

Ecosystem & Geography

Associated Families

Sequences