Scaffold Ga0214917_10043048

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10043048
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3166
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007164	Metagenome / Metatranscriptome	356	Y
F024265	Metagenome	206	N
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100430481	F100669	AGGGGG	MTKGICDLRKILHKAQVRLTQAGSLIIGYLRKIGSLVRDINKLGDSYNAKCTQNRFR
Ga0214917_100430482	F007164	AGGA	MSEKQIGMELQRTVKALEKAKETAIEQMGQAIGLAADAGDILLSARTEGLDLNAIQDIAQINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSITQWTPAQRTQFVEEARPIVEAYKEAGGEL
Ga0214917_100430486	F024265	N/A	MNEAYTTPEAKAKGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED