Scaffold Ga0214917_10039294

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10039294
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3386
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F007469	Metagenome / Metatranscriptome	350	Y
F020681	Metagenome / Metatranscriptome	222	Y
F037698	Metagenome / Metatranscriptome	167	Y
F105165	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1003929411	F105165	GGA	MTVKDDMLQLAWIFMGLGIGAWIIHEIKETAFQNGYWKGRADGWNMHRRMAETKRKSDEVFDYDKN
Ga0214917_100392944	F037698	AGGAG	MCDSHDQGTHQIDWAYQNELRKQWLLNNPDSDYEGWMSI
Ga0214917_100392945	F020681	AGG	MVKFRCNFCSANTEFIWLDGYETHEGFRVYQCLKCCGVGVKNEAESTDTQEPVMRCNKCGAWMFADKECHTCAILMIKERIK
Ga0214917_100392946	F002162	GGA	MPNYEYECPGEEIAIVVELPMDHKTPNCQVCGAIMRRVYTAVPAIFKGNGWAGKDG
Ga0214917_100392947	F007469	GGAGG	MGELQIIDGSGLTATFTDDEIKVEPSTIRCDTCNDDRLLHEGDLLRCYVCHTINRIPYNA