NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214917_10028925

Scaffold Ga0214917_10028925


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10028925 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4221
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034175Metagenome175Y
F047054Metagenome / Metatranscriptome150N
F051884Metagenome143N
F073557Metagenome / Metatranscriptome120Y
F093284Metagenome / Metatranscriptome106N
F093863Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1002892511F034175GAGMIYKPPLEARVQQLQDENIDTNNMLYELGIDIDILKIRIQTLENLIIGDGK
Ga0214917_1002892513F093284N/AMSERSEILMKQVWDVNASTEEELVSSVLKLAVEHIQSYNAQNDMIVLDKNDMLQLAEELK
Ga0214917_1002892515F051884GAGMTEHNLPVPDDAPWLDTKYDGFDEEQIKKVLKVQRQAQKLLDAAHRAADGEVPLGKLIRLGHKDLMSVRVRYEYGAILLALVEECAYKKDELYLVNVRDILDIIEVLNNGC
Ga0214917_100289254F073557AGGAMTDEQICEMVNRHRDLIRCEINHAFDRFSAFNGNEDYSAANRSVAFNDTKWIEFAKWLKGNLR
Ga0214917_100289256F047054GAGMRNGTNLMTNTHSQNLIEDSLKYTLRPRLKDRTKVISAALQYVLNHDLVNKSYLEKIVQELEEMNE
Ga0214917_100289257F093863AGGAGMINLINKLLARFGFQLVSTKPDLSLVEASVKFLNENPKFVSYCKNDTNINNYWGDINYLKERVDGEFPQVSGKTYYISQSEKYFCDYNGDENVPFEKMYEATTFTTEQLKNKLK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.