NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F093284

Metagenome / Metatranscriptome Family F093284

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F093284
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 63 residues
Representative Sequence MSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDLLQLAEELK
Number of Associated Samples 61
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 34.29 %
% of genes near scaffold ends (potentially truncated) 43.40 %
% of genes from short scaffolds (< 2000 bps) 80.19 %
Associated GOLD sequencing projects 56
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (51.887 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(38.679 % of family members)
Environment Ontology (ENVO) Unclassified
(85.849 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(90.566 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 81.25%    β-sheet: 0.00%    Coil/Unstructured: 18.75%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF08312cwf21 2.83
PF07460NUMOD3 2.83
PF07728AAA_5 2.83
PF136402OG-FeII_Oxy_3 2.83
PF08681DUF1778 1.89
PF00149Metallophos 1.89
PF16778Phage_tail_APC 0.94
PF04014MazE_antitoxin 0.94
PF13884Peptidase_S74 0.94
PF02945Endonuclease_7 0.94
PF06114Peptidase_M78 0.94
PF137592OG-FeII_Oxy_5 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG4453Uncharacterized conserved protein, DUF1778 familyFunction unknown [S] 1.89


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A51.89 %
All OrganismsrootAll Organisms48.11 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002139|M3t2BS2_1968170Not Available924Open in IMG/M
3300003277|JGI25908J49247_10020432All Organisms → Viruses → Predicted Viral1975Open in IMG/M
3300003277|JGI25908J49247_10079906Not Available807Open in IMG/M
3300003490|JGI25926J51410_1035651All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CBM2905Open in IMG/M
3300003497|JGI25925J51416_10033645All Organisms → Viruses → Predicted Viral1447Open in IMG/M
3300004810|Ga0007757_11395606Not Available696Open in IMG/M
3300005582|Ga0049080_10027305All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Charybdisvirus → Charybdisvirus scam31993Open in IMG/M
3300005582|Ga0049080_10047311All Organisms → Viruses → Predicted Viral1488Open in IMG/M
3300005582|Ga0049080_10262643Not Available561Open in IMG/M
3300005582|Ga0049080_10287865Not Available531Open in IMG/M
3300005583|Ga0049085_10123660All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2882Open in IMG/M
3300005585|Ga0049084_10115825Not Available953Open in IMG/M
3300005585|Ga0049084_10248944Not Available597Open in IMG/M
3300005585|Ga0049084_10263896Not Available576Open in IMG/M
3300005613|Ga0074649_1013810Not Available5234Open in IMG/M
3300005943|Ga0073926_10010339All Organisms → Viruses → Predicted Viral1653Open in IMG/M
3300007559|Ga0102828_1197946Not Available514Open in IMG/M
3300007735|Ga0104988_10326All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes13534Open in IMG/M
3300007735|Ga0104988_10717Not Available24244Open in IMG/M
3300009149|Ga0114918_10321102All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae860Open in IMG/M
3300009152|Ga0114980_10446188Not Available739Open in IMG/M
3300009155|Ga0114968_10293484Not Available911Open in IMG/M
3300009183|Ga0114974_10083165All Organisms → Viruses → Predicted Viral2082Open in IMG/M
3300011116|Ga0151516_10241Not Available31955Open in IMG/M
3300011995|Ga0153800_1012124Not Available854Open in IMG/M
3300012006|Ga0119955_1052282All Organisms → Viruses → Predicted Viral1264Open in IMG/M
3300012012|Ga0153799_1044719Not Available824Open in IMG/M
3300012013|Ga0153805_1013084All Organisms → Viruses → Predicted Viral1419Open in IMG/M
3300013372|Ga0177922_10062226All Organisms → Viruses → Predicted Viral1144Open in IMG/M
3300013372|Ga0177922_10676066Not Available606Open in IMG/M
3300017701|Ga0181364_1029750Not Available884Open in IMG/M
3300017736|Ga0181365_1019442All Organisms → Viruses → Predicted Viral1710Open in IMG/M
3300017761|Ga0181356_1034069Not Available1814Open in IMG/M
3300017761|Ga0181356_1135543Not Available774Open in IMG/M
3300017774|Ga0181358_1222507All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae606Open in IMG/M
3300017777|Ga0181357_1224148Not Available662Open in IMG/M
3300017784|Ga0181348_1084457Not Available1255Open in IMG/M
3300017784|Ga0181348_1138994Not Available919Open in IMG/M
3300017784|Ga0181348_1244391Not Available624Open in IMG/M
3300017784|Ga0181348_1262194Not Available593Open in IMG/M
3300019096|Ga0188835_1007536All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CBM2996Open in IMG/M
3300019784|Ga0181359_1000374Not Available9683Open in IMG/M
3300019784|Ga0181359_1011563All Organisms → Viruses → Predicted Viral3174Open in IMG/M
3300019784|Ga0181359_1013825All Organisms → Viruses → Predicted Viral2948Open in IMG/M
3300022190|Ga0181354_1007553All Organisms → Viruses → Predicted Viral3052Open in IMG/M
3300022407|Ga0181351_1119404Not Available991Open in IMG/M
3300022407|Ga0181351_1230410Not Available593Open in IMG/M
3300022752|Ga0214917_10028925All Organisms → Viruses → Predicted Viral4221Open in IMG/M
3300022752|Ga0214917_10044686All Organisms → Viruses → Predicted Viral3082Open in IMG/M
3300022752|Ga0214917_10099100All Organisms → Viruses → Predicted Viral1703Open in IMG/M
3300022752|Ga0214917_10266043Not Available787Open in IMG/M
3300022752|Ga0214917_10354757Not Available625Open in IMG/M
3300022752|Ga0214917_10405777Not Available559Open in IMG/M
3300023179|Ga0214923_10094227All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM012047Open in IMG/M
3300023179|Ga0214923_10216221All Organisms → Viruses → Predicted Viral1113Open in IMG/M
3300023179|Ga0214923_10321835All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium TMED214829Open in IMG/M
3300023184|Ga0214919_10207678All Organisms → Viruses → Predicted Viral1460Open in IMG/M
3300024262|Ga0210003_1325823Not Available580Open in IMG/M
3300024346|Ga0244775_10362078Not Available1196Open in IMG/M
3300027563|Ga0209552_1051983All Organisms → Viruses → Predicted Viral1161Open in IMG/M
3300027581|Ga0209651_1167659Not Available587Open in IMG/M
3300027586|Ga0208966_1003879All Organisms → Viruses → Predicted Viral4564Open in IMG/M
3300027600|Ga0255117_1095747Not Available563Open in IMG/M
3300027608|Ga0208974_1031453All Organisms → Viruses → Predicted Viral1599Open in IMG/M
3300027608|Ga0208974_1052801All Organisms → Viruses → Predicted Viral1164Open in IMG/M
3300027608|Ga0208974_1156366All Organisms → Viruses575Open in IMG/M
3300027649|Ga0208960_1055005All Organisms → Viruses → Predicted Viral1247Open in IMG/M
3300027656|Ga0209357_1162419Not Available590Open in IMG/M
(restricted) 3300027728|Ga0247836_1012143All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes7651Open in IMG/M
(restricted) 3300027728|Ga0247836_1090789All Organisms → Viruses → Predicted Viral1512Open in IMG/M
(restricted) 3300027728|Ga0247836_1189285All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2835Open in IMG/M
(restricted) 3300027728|Ga0247836_1215324All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01751Open in IMG/M
(restricted) 3300027728|Ga0247836_1221696Not Available733Open in IMG/M
(restricted) 3300027730|Ga0247833_1080249All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1539Open in IMG/M
3300027744|Ga0209355_1193277Not Available838Open in IMG/M
3300027759|Ga0209296_1024582All Organisms → Viruses → Predicted Viral3389Open in IMG/M
3300027782|Ga0209500_10018387Not Available4110Open in IMG/M
3300027836|Ga0209230_10193637All Organisms → Viruses → Predicted Viral1168Open in IMG/M
(restricted) 3300027970|Ga0247837_1028391All Organisms → Viruses → Predicted Viral4105Open in IMG/M
(restricted) 3300027970|Ga0247837_1141898All Organisms → Viruses → Predicted Viral1082Open in IMG/M
(restricted) 3300027970|Ga0247837_1247017Not Available704Open in IMG/M
(restricted) 3300027977|Ga0247834_1086184All Organisms → Viruses → Predicted Viral1460Open in IMG/M
(restricted) 3300027977|Ga0247834_1196547Not Available766Open in IMG/M
(restricted) 3300027977|Ga0247834_1199546Not Available757Open in IMG/M
(restricted) 3300027977|Ga0247834_1207056Not Available736Open in IMG/M
(restricted) 3300027977|Ga0247834_1228210Not Available683Open in IMG/M
(restricted) 3300027977|Ga0247834_1263324Not Available613Open in IMG/M
(restricted) 3300027977|Ga0247834_1277235All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01589Open in IMG/M
(restricted) 3300027977|Ga0247834_1281534All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae582Open in IMG/M
(restricted) 3300028044|Ga0247838_1034649All Organisms → Viruses → Predicted Viral2847Open in IMG/M
(restricted) 3300028553|Ga0247839_1174488All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01905Open in IMG/M
(restricted) 3300028553|Ga0247839_1260756Not Available670Open in IMG/M
(restricted) 3300028557|Ga0247832_1019348All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae5008Open in IMG/M
(restricted) 3300028557|Ga0247832_1305655Not Available510Open in IMG/M
(restricted) 3300028559|Ga0247831_1259673Not Available602Open in IMG/M
(restricted) 3300028569|Ga0247843_1037642All Organisms → Viruses → Predicted Viral3026Open in IMG/M
(restricted) 3300028569|Ga0247843_1098436All Organisms → Viruses → Predicted Viral1340Open in IMG/M
(restricted) 3300028569|Ga0247843_1173242Not Available855Open in IMG/M
(restricted) 3300028569|Ga0247843_1184337Not Available814Open in IMG/M
(restricted) 3300028569|Ga0247843_1207187Not Available742Open in IMG/M
(restricted) 3300028581|Ga0247840_10219036All Organisms → Viruses → Predicted Viral1052Open in IMG/M
(restricted) 3300029286|Ga0247841_10371093Not Available954Open in IMG/M
(restricted) 3300029286|Ga0247841_10863054Not Available529Open in IMG/M
3300031539|Ga0307380_11075885Not Available635Open in IMG/M
3300031565|Ga0307379_10493979All Organisms → Viruses → Predicted Viral1147Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater38.68%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake25.47%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic12.26%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater7.55%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.72%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.89%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.89%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.94%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.94%
Surface IceEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice0.94%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.94%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.94%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment0.94%
MarineEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine0.94%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand0.94%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002139M3t2BS2 (117f)EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003490Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SNEnvironmentalOpen in IMG/M
3300003497Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DNEnvironmentalOpen in IMG/M
3300004810Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005583Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRFEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300005943Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14EnvironmentalOpen in IMG/M
3300007559Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541EnvironmentalOpen in IMG/M
3300007735Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014OctEnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300011116Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015NovEnvironmentalOpen in IMG/M
3300011995Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012006Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101BEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012013Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface IceEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017774Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017777Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019096Metatranscriptome of marine microbial communities from Baltic Sea - GS676_0p1EnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022190Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.NEnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300027563Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027581Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027586Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027600Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8hEnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027649Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027656Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027728 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14mEnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027744Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027836Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027970 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5mEnvironmentalOpen in IMG/M
3300027977 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12mEnvironmentalOpen in IMG/M
3300028044 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_15mEnvironmentalOpen in IMG/M
3300028553 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_16mEnvironmentalOpen in IMG/M
3300028557 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_4mEnvironmentalOpen in IMG/M
3300028559 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_1mEnvironmentalOpen in IMG/M
3300028569 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8mEnvironmentalOpen in IMG/M
3300028581 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17mEnvironmentalOpen in IMG/M
3300029286 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_18mEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
M3t2BS2_196817033300002139MarineMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDLLKLAEELK*
JGI25908J49247_1002043223300003277Freshwater LakeMSERSEILMKQVWDVNASTEEELVSSVLKLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
JGI25908J49247_1007990623300003277Freshwater LakeMSDRSEILMKQVWDVNASTEEELVSSVLKLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
JGI25926J51410_103565113300003490Freshwater LakeMTERSQALMKQIWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKND
JGI25925J51416_1003364553300003497Freshwater LakeMTERSQALMKQIWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLXQLAEELK
Ga0007757_1139560633300004810Freshwater LakeERSEILMKQVWDVNASTEEELVSSVLKLATEHIQSYNAQNDMIVLDKNDLLQLAEELK*
Ga0049080_1002730543300005582Freshwater LenticMTERSQALMDQIWNIRYSNPDMTEKELVSSVLQLAAEQVTSYNAQNDMIVLDKNDLLQLAEELK*
Ga0049080_1004731113300005582Freshwater LenticTHTHKLLMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDMLQLAEELK*
Ga0049080_1026264333300005582Freshwater LenticFFMLYYTHTHKLLMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQFYTAQNNMVVLDRDDLLQLAEELK*
Ga0049080_1028786533300005582Freshwater LenticKLLMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDLLQLAEELK*
Ga0049085_1012366033300005583Freshwater LenticMSDRSEILMKQVWDVNASTEEELVSSVLKLAAEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0049084_1011582533300005585Freshwater LenticMLYYTHTHKLLMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQSYTAQNNMIVLDKNDLLQLAEELK*
Ga0049084_1024894413300005585Freshwater LenticLMSDRSEILMKQIWDVNASTEEELVSSVLQLAAEHIQSYTAQNNMIVLDKNDLLKLAEELK*
Ga0049084_1026389623300005585Freshwater LenticMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDLLQLAEELK*
Ga0074649_101381033300005613Saline Water And SedimentMTERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQFYTAQNNMVVLDRDDLLKLAEELK*
Ga0073926_1001033963300005943SandMSERSEILMKQVWDVNASTEEELVSSVLKLAVEHIQSYTAQNNMIVLD
Ga0102828_119794613300007559EstuarineMKQVWDVNASTEEELVSSVLKLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK*
Ga0104988_10326163300007735FreshwaterMSERAQNLMDQIWNIRYLNPDMTEKELVSSVLQLAVEHIQFYNAQNNMVVLDKNDLLKLAEELK*
Ga0104988_10717253300007735FreshwaterMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDRDDLLKLAEELNN*
Ga0114918_1032110213300009149Deep SubsurfaceKLQMTERSQALMDQIWNIRGLNPDMTEKELISSVLQIAVEHIQFYNAQNDMIVLDKNDLLQLAEELK*
Ga0114980_1044618823300009152Freshwater LakeMTERAQNLMDQIWNIRGLNPDMTEKELVSSVLQVAVEHIQSYNAQNDMIVLDKNDLLQLAEELK*
Ga0114968_1029348423300009155Freshwater LakeMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQVAVEHIQSYTAQNNMIVLDKNDLLQLAEELK*
Ga0114974_1008316513300009183Freshwater LakeERAQNLMDQIWNIRGLNPDMTEKELVSSVLQVAVEHIQSYTAQNNMIVLDKNDLLQLAEELK*
Ga0151516_10241103300011116FreshwaterMSERAQNLMDQIWNIRYLNPDMTEKELVSSVLQLAVEHIQFYTAQNNMVVLDKNDLLQLAEELK*
Ga0153800_101212423300011995FreshwaterMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLKLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK*
Ga0119955_105228253300012006FreshwaterMSERAQNLMDQIWNIRELNPDMTENDLVSSVLQLAVEHIQSYNAQNDMVVLDKNDLLQLAEELK*
Ga0153799_104471913300012012FreshwaterPTRSSRDCLKTSTLTPLQGSFFMLYYTHTHKLLMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQVAVEQVTSYNAQNDMIVLDKNDLLQLAEELK*
Ga0153805_101308453300012013Surface IceHKLLMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQVAVEHIQSYTAQNNMIVLDKNDLLQLAEELK*
Ga0177922_1006222613300013372FreshwaterHKLLMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDLLQLAEELK*
Ga0177922_1067606633300013372FreshwaterSFFMLYYTHTHKLLMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDMLQLAEELK*
Ga0181364_100208363300017701Freshwater LakeMAERSQALMKQVWDVNASTEEELVSSVLKLATEHIQSYNAQNDMIVLD
Ga0181364_102975023300017701Freshwater LakeMSERSEILMKQVWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEE
Ga0181365_101944263300017736Freshwater LakeMKQVWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0181356_103406913300017761Freshwater LakeMSERSEILMKQVWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKN
Ga0181356_113554313300017761Freshwater LakeMSERSEILMKQIWDVFASTEEELVSSVLKLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0181358_122250733300017774Freshwater LakeSERSEILMKQVWDVNASTEEELVSSVLKLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0181357_122414833300017777Freshwater LakeMSDRSEILMKQVWDVNASTEEELVSSVLKLAVEHIQSYNAQNDMIVLDKNYLLQLAEELK
Ga0181348_108445763300017784Freshwater LakeMSERSEILMKQVWDVNASTEEELVSSVLKLAVEHIQSYNAQNDMIVLDKNDL
Ga0181348_113899433300017784Freshwater LakeMSERSEILMKQIWDVNASTEEELVSSVLQLAVEHIQFYNAQNDMIVSDKKDLLQLAEELK
Ga0181348_124439123300017784Freshwater LakeMSDRSEILMKQVWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0181348_126219423300017784Freshwater LakeMSDRSEILMKQVWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQ
Ga0188835_100753653300019096Freshwater LakeMTDRATTLMQEVWDVKASTEEELVAAVLKLAVNYVTHYNAQNDMMVLDRNDLLELA
Ga0181359_100037483300019784Freshwater LakeMTERSQALMKQIWDVNASTEEELVSSVLKLATEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0181359_101156363300019784Freshwater LakeMSERSEILMKQVWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0181359_101382573300019784Freshwater LakeMTERAQNLMDQIWNIRGLNPDMTEKELVSSVLQVAVEHIQSYTAQNNMIVLDKNDLLQLAEELK
Ga0181354_100755353300022190Freshwater LakeMSERSEILMKQVWDVNASTEEELVSSVLKLATEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0181351_111940423300022407Freshwater LakeMSERSEILMKQVWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEEL
Ga0181351_123041023300022407Freshwater LakeMSERSEILMKQIWDVNASTEEELVSSVLQLAVEHIQFYNAQNDMIVLDKNDLLQLAEELK
Ga0214917_10028925133300022752FreshwaterMSERSEILMKQVWDVNASTEEELVSSVLKLAVEHIQSYNAQNDMIVLDKNDMLQLAEELK
Ga0214917_1004468613300022752FreshwaterMSERAQNLMDQIWNIRELNPDMTENDLVSSVLQLAVEHIQSYNAQNDMVVLDKNDLLQLAEELK
Ga0214917_1009910053300022752FreshwaterMSERAQNLMNQIWNIRELNPDMTEKELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0214917_1026604323300022752FreshwaterMSDRSEILMKQIWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMVVLDKNDLLKLAEELK
Ga0214917_1035475723300022752FreshwaterMSERAQNLMDQIWNIRELNPDMTEKELVSSILQLAVEHIQSYNAQNDMVVLDKNDLLQLAEELK
Ga0214917_1040577713300022752FreshwaterMSERAQNLMNQIWNIRELNPDMTENDLVSSVLQLAAEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0214923_1009422743300023179FreshwaterMSERAQNLMDQIWNIRELNPDMTEKELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEE
Ga0214923_1021622113300023179FreshwaterERAQNLMDQIWNIRELNPDMTENDLVSSVLQLAVEHIQSYNAQNDMVVLDKNDLLQLAEELK
Ga0214923_1032183513300023179FreshwaterMSERAQNLMDQIWNIRELNPDMTENELVSSVLQLAVEHIQSYNAQNDMVVLDKNDLLQLAEELK
Ga0214919_1020767813300023184FreshwaterMSERAQNLMDQIWNIRELNPDMTEKELVSSVLQLAVEHIQSYNAQNDMVVLDKNDLLQLAEELK
Ga0210003_132582323300024262Deep SubsurfaceMISYSHRYKLQMTERSQALMDQIWNIRGLNPDMTEKELISSVLQIAVEHIQFYNAQNDMIVLDKNDLLQLAEELK
Ga0244775_1036207863300024346EstuarineMSERSEILMKQVWDVNASTEEELVSSVLKLAVEHIQSYNAQNDMIVLD
Ga0209552_105198323300027563Freshwater LakeMKQVWDVNASTEEELVSSVLKLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0209651_116765913300027581Freshwater LakeMTERSQALMKQIWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAE
Ga0208966_100387973300027586Freshwater LenticMSERSEILMKQVWDVNASTEEELVSSVLQLAAEQVTSYNAQNDMIVLDKNDLLQLAEELK
Ga0255117_109574713300027600FreshwaterMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAAEHIQSYTAQNNMIVLDKNDLLKLAEELK
Ga0208974_103145313300027608Freshwater LenticGSFFMLYYTHTHKLLMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDMLQLAEELK
Ga0208974_105280143300027608Freshwater LenticLLMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDLLQLAEELK
Ga0208974_115636613300027608Freshwater LenticGSFFMLYYTHTHKLLMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQFYTAQNNMVVLDRDDLLQLAEELK
Ga0208960_105500543300027649Freshwater LenticMLYYTHTHKLLMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQSYTAQNNMIVLDKNDLLQLAEELK
Ga0209357_116241933300027656Freshwater LakeLMKQVWDVNASTEEELVSSVLKLATEHIQSYNAQNDMIVLDKNDLLQLAEELK
(restricted) Ga0247836_1012143113300027728FreshwaterMTERSQALMDQIWNIRYSNPDMTEEQLLSAVLKLAAEKVTSYNAQNDMIVLDKNDLLQLAEELKSVEITTTSTKTS
(restricted) Ga0247836_109078933300027728FreshwaterMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDMLQLAEELK
(restricted) Ga0247836_118928523300027728FreshwaterMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQSYNAQNDMIVLDKNDMLQLAEELK
(restricted) Ga0247836_121532423300027728FreshwaterMPMSERSEILMKQIWDVNASTEEELVSSVLKLAVEHIQFYNAQNDMIVLDKNDLLQLAEELKSVEITTTSTKTS
(restricted) Ga0247836_122169633300027728FreshwaterMTERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDRNDLLQLAEELK
(restricted) Ga0247833_108024923300027730FreshwaterMSERAQNLMDQIWNIRYSNPDITEKELVSSVLQLAVEHIQSYNAQNDMIVLDRNDLLQLAEELK
Ga0209355_119327713300027744Freshwater LakeMSERSEILMKQIWDVNASTEEELVSSVLQLAVEHIQFYNAQNDMIVLDKNDLL
Ga0209296_102458243300027759Freshwater LakeMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQVAVEHIQSYTAQNNMIVLDKNDLLQLAEELK
Ga0209500_10018387103300027782Freshwater LakeMTERAQNLMDQIWNIRGLNPDMTEKELVSSVLQVAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0209230_1019363713300027836Freshwater And SedimentMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQSYTAQNNMIVLDKND
(restricted) Ga0247837_102839113300027970FreshwaterRAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQSYNAQNDMIVLDRNDLLQLAEEL
(restricted) Ga0247837_114189823300027970FreshwaterMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYTAQNNMVVLDKNDLLKLAEELK
(restricted) Ga0247837_124701723300027970FreshwaterMSERAQNLMDQIWNIRYSNPDITEKELVSSVLQLAVEHIQSYNAQNDMIVLDKNDMLQLAEELK
(restricted) Ga0247834_108618433300027977FreshwaterMSERAKNLMDQIWNIRYLNPDMTEKELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
(restricted) Ga0247834_119654733300027977FreshwaterGGTKILMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYTAQNNMVVLDKNDLLKLAEELK
(restricted) Ga0247834_119954633300027977FreshwaterMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQSYNAQNDMIVLDRNDLLQLAEELK
(restricted) Ga0247834_120705633300027977FreshwaterQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDRNDLLQLAEELK
(restricted) Ga0247834_122821033300027977FreshwaterMSERAQNLMDQIWNIRYSNPDITEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDMLQLAEELK
(restricted) Ga0247834_126332413300027977FreshwaterQIWNIRYSNPDMTEKELVSSVLQLAVEHIQSYNAQNDMIVLDKNDMLQLAEELK
(restricted) Ga0247834_127723513300027977FreshwaterGGTKILMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYTAQNNMVVLDKNDLLQLAEELK
(restricted) Ga0247834_128153433300027977FreshwaterQIWNIRYSNPDITEKELVSSVLQLAVEHIQSYNAQNDMIVLDRNDLLQLAEELK
(restricted) Ga0247838_103464913300028044FreshwaterCGGKKILMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQSYNAQNDMIVLDRNDLLQLAEELK
(restricted) Ga0247839_117448813300028553FreshwaterMPMSERSEILMKQIWDVNASTEEELVSSVLKLAVEHIQFYNAQNDMIVLDKNDLLQLAEELK
(restricted) Ga0247839_126075633300028553FreshwaterRAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYTAQNNMVVLDKNDLLKLAEEL
(restricted) Ga0247832_101934843300028557FreshwaterMSERSEILMKQIWDVNASTEEELVSSVLKLAVEHIQFYNAQNDMIVLDKNDLLQLAEELKSVEITTTSTKTS
(restricted) Ga0247832_130565513300028557FreshwaterSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYTAQNNMVVLDKNDLLQLAEELK
(restricted) Ga0247831_125967333300028559FreshwaterMSERAQNLMDQIWNIRGLNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDMLQLAEELK
(restricted) Ga0247843_103764283300028569FreshwaterMTERSQALMDQIWNIRYSNPDITEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDMLQLAEELK
(restricted) Ga0247843_109843623300028569FreshwaterMSERAKNLMDQIWNIRYSNPDITEKELVSSVLQLAVEHIQSYNAQNDMIVLDRNDLLQLAEELK
(restricted) Ga0247843_117324233300028569FreshwaterMSERSEILMKQIWDVNASTEEELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
(restricted) Ga0247843_118433713300028569FreshwaterMSERAKNLMDQIWNIRYSNPDITEKELVSSVLQLAVEHIQSYNAQNDMIVLDKNDMLQLAEELK
(restricted) Ga0247843_120718723300028569FreshwaterMTERAQNLMDQIWNIRYSNPDITENELVSSVLQLAVEHIQSYNAQNDMIVLDKNDMLQLAEELK
(restricted) Ga0247840_1021903613300028581FreshwaterLMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQSYNAQNDMIVLDRNDLLQLAEELK
(restricted) Ga0247841_1037109333300029286FreshwaterMSERAQNLMDQIWNIRYSNPDMTEKELVSSVLQLAVEHIQFYNAQNDMIVLDKNDMLQLAEEL
(restricted) Ga0247841_1086305423300029286FreshwaterQIWNIRYSNPDMTEKELVSSVLQLAVEHIQSYNAQNDMIVLDKNDLLQLAEELK
Ga0307380_1107588513300031539SoilETGTPTPLQESFFMISYSHRHKLQMTERSQALMDQIWNIRGLNPDMTEKELVSSVLQIAVEHIQFYNAQNDMIVLDKNDLLQLAEELK
Ga0307379_1049397943300031565SoilMISYSHRHKLQMTERSQALMDQIWNIRGLNPDMTEKELVSSVLQIAVEHIQFYNAQNDMIVLDKNDLLQLAEELK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.