Scaffold Ga0214917_10019912

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10019912
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5550
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F019290	Metagenome	230	Y
F045612	Metagenome	152	Y
F088510	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100199125	F045612	N/A	MAKHTYEELISSLNYLEAEGYIEKFIDEKGDICYRICEGAENCDV
Ga0214917_100199126	F088510	N/A	MSTEDHAMLFEIRERIARIEARQVHILDVLTENKNKVMKMEEEAHALKGKIWLISTIVFAFLAAIWEVAKNKFLR
Ga0214917_100199127	F006138	GAG	MAATTIGQSGLTWGASTETYGLIQSFSETRNIEKSEVKNNAGEITAIAFYNPTTAYSLSVAVTGSPTVTAGGALTALANATGSLGTCRVDSVTINKSNSSFVTMDISATGYPNVS
Ga0214917_100199128	F019290	N/A	MLEGYSFWGTTNIKVASAVATFGAKIRKIDPVTHIIKENGEKQITFWFESGDSGNVKKEMEAKWNEMTCDEESPIRYVRAALENRETLLGLVKKAEPMQIVEKNNQTLFIPVNATAEKKLAILRAI