Scaffold Ga0214917_10019409

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10019409
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5651
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F039497	Metagenome / Metatranscriptome	163	N
F062447	Metagenome / Metatranscriptome	130	N
F082149	Metagenome / Metatranscriptome	113	N
F104482	Metagenome / Metatranscriptome	100	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001940910	F024040	GAGG	MNFYVTGHNWFAKVDIDTKKIDKSNWYNEACTRAIESILDQEEKEGVDLKIQDYDDFGLGIILLTWDEKNSKNEDEHRVILTSNVLANAGRWAEYKQVKDYEEQCKGFGL
Ga0214917_1001940912	F104483	GGAG	MNKKIIDKIDLVIEDILNLQELIDFDTSDSSEYDLDSVINLLAEIRGRVANEEDEVEKIDLKQL
Ga0214917_1001940916	F039497	N/A	MKEEDNFDCQAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNANTQGDEDEI
Ga0214917_1001940917	F082149	AGG	MKLGLHIDWCIGRWFGRDNNLEIRVTLPTISLGFKKEDDDKWFGFKFNLRTDISFQSYEYGKIFTLILFGFGLKVSKFNI
Ga0214917_100194093	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDLIDAKLLKTFPSPYHARNWIENDGKRIN
Ga0214917_100194094	F034827	N/A	MKYTITSQDTESLIEFDKIKEGEVFSFFDPESVQRGNHSIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL
Ga0214917_100194096	F104482	N/A	MKNRKKKMTSEEFEKAMKAQGCFVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMSGKYFTECGFHWLGWIFEFQWNR
Ga0214917_100194098	F032536	N/A	MSERKTFEELMRSFRFHKNPILNWAFAESNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYIGKEDDFVFNTTLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSKVGLEELYEVYPKAFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLILLGLYFRDLWD
Ga0214917_100194099	F062447	AGGA	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGVKSFSLQDIKEVLDSVRETLNKL