NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214917_10019198

Scaffold Ga0214917_10019198


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10019198 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5690
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F032536Metagenome / Metatranscriptome179Y
F062447Metagenome / Metatranscriptome130N
F082149Metagenome / Metatranscriptome113N
F104482Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001919810F024040GAGMILKMMKMTEKIILHTDMNFFVTGHNWLAKVTLEKDIKKSDRYTEATTRAIESLLDQEEKEGVKLKVLNYDDYGLGLITLTYDEKHTKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL
Ga0214917_1001919811F062447AGGAGGMKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNSKNPVATAYFYGKEAQGTSWGGGNYTFPETKLMVTFDKDKEGYSFNGGLKSFSLQDLKEVLDSVRETLNKV
Ga0214917_1001919812F032536GGAMSQKQTFEEVMESFRFHKNPILNWAFGQSNYLYHTYLNTKWKVRDTFQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLVIDDKIVPYVGKEDNFEFNEKLGCYKDKTTGLGISLDEKEYEYILDEIIFALQIIVDEDDINVSLEEIYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLILLGLYFKDLWD
Ga0214917_1001919814F104482N/AMTSEEFEKAMKAQGCFVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMSGKYFTECGFHWLGWIFEFQWNR
Ga0214917_100191983F082149AGGMKLGLHIDWCIGRWFGRNNNLEIRVTLPTISLGYKKEDDDKWFGFKLNLRTDISFQSYEYGKIFTLIFLGIGVKVSKFNL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.