Scaffold Ga0214917_10015865

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10015865
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6498
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F013514	Metagenome / Metatranscriptome	270	Y
F014121	Metagenome / Metatranscriptome	265	Y
F018913	Metagenome / Metatranscriptome	232	Y
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001586512	F013514	GGA	MIMNLEEIQKFLDDNNITLEEYLRENMITDEERKYIDKIWVDAIYRNLGEDTP
Ga0214917_1001586517	F090316	GAGG	MPDDLQREELFFKALKEYKEKKSQEPQDKTTNTLPAVIATVL
Ga0214917_100158652	F004208	GGAG	MTYKLNPEAKAFSYTRENLFECITKIVAHPHNTITEHDQSRAIAIMLVFEDYLTNHTQSDNNGGYCVYECDALDFQDFAIQKLGLEYYHYVDVDEVLK
Ga0214917_1001586521	F018913	N/A	MNEFNSNQQRAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGTNKIDFTDELDVMFNAGWDECLKEIDAICDELLEL
Ga0214917_1001586522	F014121	N/A	MMNNTAYQIWETFKAELIVEPTDDMKEALASSIRVISSLIYRDGVLADEPWHFYIAQELNEYADELEAL