Scaffold Ga0214917_10015037

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10015037
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6748
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F044916	Metagenome / Metatranscriptome	153	Y
F048123	Metagenome / Metatranscriptome	148	Y
F049419	Metagenome / Metatranscriptome	146	Y
F062447	Metagenome / Metatranscriptome	130	N
F064403	Metagenome / Metatranscriptome	128	N
F078229	Metagenome / Metatranscriptome	116	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001503710	F032548	N/A	MKHNQEMEKAIKILEELVNQADEDCPHDCRTMHFVNALEEASEFIMEYKNTK
Ga0214917_1001503715	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETHKDNYPNVDFVDAKLLKTFPSPYHARNWMENDGKRIN
Ga0214917_1001503716	F078229	N/A	MSDIKYTYYVEQDKDKDGNYIQSFSVYKTPVVKTIRVKTFKKLSDANNFLEKYESN
Ga0214917_1001503717	F034827	N/A	MKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSNKKRNTINDPDEQQGNRVYKLNAKINIVII
Ga0214917_1001503718	F048123	GGA	MKPRYDFTKGKLISYDGEIIEFAGSAIVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPTKLQKFKKKYGFSLTNKSNISKIAERMYNFRPF
Ga0214917_1001503719	F104482	N/A	MTSEEFEKAMKAQGRLVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0214917_1001503721	F032536	AGAAG	MSQKQTFEEIIQNFRFHKNPILNWTFSQSNYLYHTFLNTKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVPKEDDFEFNTTLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSEVGLEEVYEVYPQGFDPIKDRQMFLEKQEDGTYLVEFEKKENIQPDYSKLNKAYERQRNGLILLGLYFRDLWD
Ga0214917_1001503722	F062447	AGGAG	MKHKIFWENNSRIKGIVPSEQIIKKTQTHNFPCEAVTIRMHDLNAKNPVAVAYFHGKESQHIGWGGQNHSFAETKLIVTFNKEKEEYGFNGAIRSFSLQDLKEVLDSVKEVLNKV
Ga0214917_1001503723	F024040	N/A	MNVYVSGHNWLAKVDLEDSIRKNDRYAEATTRAIESVLDDEEKQGVELKIMDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEEYKFLRNYEENCKEQGL
Ga0214917_100150373	F049419	N/A	MKFPKLNILDLVTTYIFFGLVYGTIITLTWNYLFEQTFNIHLSILQGFGIHLIARILFGNTNTNYISNFYSQKTPDLDKIDDYLKEIQADLDKEADEVEKQYEDLNKKD
Ga0214917_100150377	F044916	N/A	MGKKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRAFAKTSLEILYKDNPNLFADHAKLKLKKK
Ga0214917_100150378	F064403	GGA	MISPRSKILSDLKIAYLKEHPVSLVDRILGLLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF