Scaffold Ga0214917_10013762

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10013762
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7180
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (100.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010619	Metagenome / Metatranscriptome	301	Y
F014135	Metagenome / Metatranscriptome	265	Y
F019602	Metagenome / Metatranscriptome	228	N
F022413	Metagenome / Metatranscriptome	214	N
F030431	Metagenome / Metatranscriptome	185	N
F043225	Metagenome / Metatranscriptome	156	Y
F043920	Metagenome / Metatranscriptome	155	N
F092043	Metagenome	107	Y
F100405	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001376210	F043225	AGGA	MNLDLINAELQDVALTQQQEEIDLTYQDFLDTMNAYHDMMMYACHSYDEDAIFYGVN
Ga0214917_1001376212	F014135	GGAG	MSNGLTIDFDTADRITLLVLKDQLKYLQKELEDFKEGKYLHPEDVANNIKIIAALELLIPYYGGTV
Ga0214917_1001376214	F092043	GGAG	MMPWYKKLLLMIIAPFIIGAWCIMNPRKVWEQAKKDFGVEQ
Ga0214917_1001376216	F022413	AGGA	MLLAKPKLTNTLDAKEFETFSECQEYLETYTDISMPLVEWIALGKILVAETMTTPEFYPKKVKGQIVMTKFDIEEFA
Ga0214917_1001376219	F030431	GAGG	MSDIEIEINEILDTTVMLCEEIAEQVGCPVEWVEKIVEKRWNDLLFSNDDFMNGYDMAKENM
Ga0214917_1001376220	F043920	AGGAG	MRGSIIMLVSFLIVFGAVGGIEVNPDADLFTLMMIAIVGLIGMLIGVSVMREDA
Ga0214917_100137624	F010619	GGAG	MEEPIDFENSHPCMEKIIESDKLLPVTKSVAKMLMRNPYTSLGKFFKKLSDENLEVLMEIIDEGDSEFNDGMEDIVLMTEMLSRAEGVPSQSIEDITENVNYFGACVTCVSLARKGLVRVYYDNMSFGTDQGDKILVEKLD
Ga0214917_100137627	F019602	GGA	MDDRAVIERYILEAWDKGLTGADVVTYVQYMSSVPIFEIEPVLQNLIARMSE
Ga0214917_100137628	F100405	AGGA	MTKSVQQYTKIFEVLQNAKAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKPAKVKAVKPAKAPVVKATKPVVAKAKKVTPTPVPAGDSLDGIMNAMAKSSAKKPVNLLDEIDTDVADYEDRAFAEAYIRT