Scaffold Ga0214917_10013571

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10013571
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7257
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001357112	F017788	AGG	MKKIIITSLLVLLLIPTASVEAATKSLNLKSNKAACKNIKTKYKSEVMSKWSNGLASDQDVLKEIDLNIDMLTAKQKSTTGKIKTTIDSWITAEKNTKVALTDKNVEAITTAMNLKISSITNFDKLCKSIEK
Ga0214917_1001357117	F004475	GAGG	MTNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWKSKGLLKSRKTQKAFEASAAIVRGENEKIL
Ga0214917_100135717	F011077	AGG	MDTNLTWAEEDVNLWKGWTYSPEKNRYYFNDIGNESLSAFWADEFLNQAYV
Ga0214917_100135718	F037701	GGA	MIITKEWRVTNRAWLSVGFAPRRIGLGFSVDKFYANIDFLWFWVTLEY
Ga0214917_100135719	F020851	N/A	MSEDIVDLAISMAEIDTGMQLPLEERESMKQRILARIEGINQ