Scaffold Ga0214917_10012920

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10012920
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7516
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F014488	Metagenome	262	Y
F024265	Metagenome	206	N
F033350	Metagenome	177	N
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100129201	F100669	AGGGGG	MTKGICDLRKFLHKAQVRLTQAGSLIIGYLRKIGSIVRGINKLGDSYNAKSTQNRFR
Ga0214917_1001292012	F033350	GGAGG	MSIDVDVPRLKWSMLQWKTVEEKPKNDEKVLMDIGGEVVVGRFVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0214917_1001292017	F005702	GAGG	VIIFLVAFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKQPELVLPTKNWVGRN
Ga0214917_1001292018	F005846	AGTAGG	VPASHDEFSDGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVVWEGFVMKATDDGKYPFITNPNYCSPAWQKQRIRW
Ga0214917_100129202	F007164	N/A	MSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPAQWTPAQRTQFLEEARPIVEAYKEAGGEL
Ga0214917_100129204	F014488	GGA	MNHHQGQDPADSILASYTPNMADHIDTLEDRVKERLAQMKAMNPAIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDEALLALASNRSPDSLTAIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNAEAWAKGIKKRGKKR
Ga0214917_100129206	F024265	N/A	MNEAYTTPEAKANGILADRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKCED
Ga0214917_100129208	F010463	N/A	MNHPQELVLAATIHRVKMCEDRIREFEQMVTTLTAQMAHNRAELASKGLANLVMGTTTPLDIPRELVPTYGKYRARGNRTHAVVMKRWEIWKAQHESGLSLRDIAKAWGCHPTSVLNAKNRKFKARKATGRNTK