Scaffold Ga0214917_10008328

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10008328
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10215
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (36.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006658	Metagenome / Metatranscriptome	367	Y
F025022	Metagenome / Metatranscriptome	203	Y
F085684	Metagenome / Metatranscriptome	111	Y
F091930	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000832826	F025022	GGA	MKLTILAYKLSDGMWAFDHPHNDTVEELLMNGTEEAIDEHFYFGTGRHAVENDQMEIILNTEEPADYDTLLVKEVSDDDGTTYMDTTLCIPVWLCNWNQGYFGFVPEELYVKVRPINKGLEAFKKRTGMINI
Ga0214917_1000832830	F006658	N/A	MLLFADILRQKQNFWNSKNNTPIITMTEPFGFNEVSTGELIDSPKFQEEQSKKNTLLESLNSPEMVKMREDLAKAHKDSIEKSVGWYHMLSAEDKYKAVEAFCYIICKAEREGTSHRGLMHELGVYPEAFWIDDLMTIHNALYTEYQEQDSRNWKEVKEDMKTLNETLD
Ga0214917_100083284	F091930	GAGG	MSADELVLHKDYEDFASSYLGVEYEDYVELVGDFELYEDEIEYALSI
Ga0214917_100083286	F085684	N/A	MNSPIVYAYAEIEKAYNILKEVVKREHKLHQMDMTIMMEHLDSLEDEIIPLIEEIVYFDPSP