Scaffold Ga0214917_10007613

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10007613
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10900
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (78.79%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001125	Metagenome / Metatranscriptome	769	Y
F007363	Metagenome / Metatranscriptome	352	Y
F007470	Metagenome / Metatranscriptome	350	Y
F014142	Metagenome / Metatranscriptome	265	Y
F015208	Metagenome / Metatranscriptome	256	Y
F034472	Metagenome / Metatranscriptome	174	N
F038643	Metagenome / Metatranscriptome	165	Y
F073599	Metagenome / Metatranscriptome	120	Y
F105172	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100076131	F034472	AGGA	MPNWVYNTVTIQGPKEEIDYIKDRLNRPFTLAQETYGMGDISLSGFPTKIQ
Ga0214917_1000761315	F038643	AGG	MSQFENWKSYPFTVDGVEFVSLLDPSGSMYQQVSKIPAYVFTAMNESAIRELIGKVSLMSKSEIQDELDRINEGYGQAYLALA
Ga0214917_100076132	F001125	AGGCGG	MGDRANFGFRQSNENVVFLYGHWAGHNMLSQLAEAVAVARPRWTDESYATRIAISQLIGEDWKQELGWGLHINEIGDNEHKVPVIDWTNQTFTLYEEDLKTVVFSMSLLDFCTKYSQLIM
Ga0214917_1000761322	F015208	GGA	MYKITVAYDENAPHFTQEIADELEAHKSFASYVDWGFAMDYSTVNLFTPNGKCYTKIFYREGRKVVEK
Ga0214917_1000761324	F007363	AGGA	MRSYSIVDLLIDQYYSPTSLRRRYNGGIINFAEKRDDVYLSEGYEAYSIRYRPTGSLKDEWATVAVRLPD
Ga0214917_1000761330	F105172	AGGA	MTLELNDYGLEFDTYVCYIALSWQVLIPATIALIAYKIYKRMKNKNVY
Ga0214917_1000761332	F073599	AGGA	MSANLYNIESLLIGKTYRSRSVVGEIISAEKHPQAVWYQDAEAYLVEIRKQGGGYTYRSVAVSV
Ga0214917_1000761333	F014142	N/A	LMNTISVIVEPSHSMASSNTKSNEVFRLANGNYISRKAYVYMVASEGLISHRYLSPNESRWVMEYRKEVA
Ga0214917_100076134	F007470	AGGAG	MDYQDGFEDGVKFAREVIIANIRQWAESSDEGQVYDDIADRIEFGTVDYDL
Ga0214917_100076135	F000311	GGA	MYFELTAPDRLSMEMAYWDAQIMGLDPQAMTPLTFNIGTGSIEKVSRIRDKFNLTETYVSEYEETGYTRR