NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10006562

Scaffold Ga0214917_10006562


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10006562 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12028
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (91.43%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004666Metagenome / Metatranscriptome428Y
F018162Metagenome / Metatranscriptome236Y
F018349Metagenome / Metatranscriptome235Y
F037190Metagenome / Metatranscriptome168Y
F041724Metagenome / Metatranscriptome159Y
F091432Metagenome / Metatranscriptome107Y
F091920Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000656217F091920AGAAGGMRNRYRIEIYDEVKSNDLTLFSDDGIDKEHLTEIVFSNLNNFSGNVRAFVYDKQKKRKTVALFLPMTTVTKYKPKQLTRIELGLI
Ga0214917_1000656224F018349AGGAGGMDYKDGFEDGVKFTREVIINNIRKWAEDSILGEEGVIIDSIADKIEFGTLDNDL
Ga0214917_1000656226F018162AGGAMLANLAEAVAKAQPRWSDPSYATRIAISNMIGDGWSMETGWGLHVNEIGDNEHKIAIVDFNQMTFSLHEEDSFYNQDNKVRGMKNEALFTMDLRAFVEKYTDSPILV
Ga0214917_1000656228F041724AGGAMANRLELNDRGSFLDDENQMVVDAICTEIGEQLFEEWNNSNLDEGTFYADYQIASLSDSNYLKGRFNQFYDLNKGDEYYLEWDEEK
Ga0214917_100065623F037190AGGAMDRYLLIELGSEGIAFETAQFDFYASWLGIGIAIVSVVAYKIWKNRK
Ga0214917_1000656234F004666AGGAMATKREYLAQKGITVGRRGRFSAAAKQALSEAEKNGIKFTAEVKQAKN
Ga0214917_100065627F091432AGGAMDLIEFRNHILAERMAEIKEKRNNNLTAILSVANATISDNKERKEN
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