Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10006376 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10006376 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12271
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (80.65%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

12271

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (80.65%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003393	Metagenome / Metatranscriptome	489	Y
F004132	Metagenome / Metatranscriptome	451	Y
F006844	Metagenome / Metatranscriptome	363	Y
F017788	Metagenome / Metatranscriptome	238	Y
F019320	Metagenome / Metatranscriptome	230	N
F019826	Metagenome / Metatranscriptome	227	N
F020851	Metagenome / Metatranscriptome	221	Y
F037701	Metagenome / Metatranscriptome	167	Y
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000637613	F019826	GGAG	MRRSIRLGISKEEKVASRITTMLSDFTLDLEAIGFYLAKASPHIIYTRANEVLEAMQYNKEVDQLDRGAYNGRR
Ga0214917_1000637615	F006844	AGGAG	MARWEIEVIFEPTGDYMNFEYETDTEDEDAIFNEVSNQLSIVPFLIEKNEEE
Ga0214917_1000637618	F019320	GAG	MHTLHWIAIKADSKESAFAIIRDNLLPNEDGYRLADWSDWHVVGGGRWNNVGDGYTDQDNMIISYAEKPDEFKKVLSNIKQHRINQMNNKLIKLDEAFDKLKSDIVDYISNDCKLEDKRQFDFSRWEIKEAISILNNEWIPDSAFFDNEEFTSSLQYLEERLDKPEEAALQYLVPVDFHF
Ga0214917_1000637620	F084233	AGGA	MTLKVEIYEVDYSCSPGGVNCWEVSIDEWCVSDFKTAGDALNYVLDKYPHQEIDLNVKSLNWYFKEFQDEYAV
Ga0214917_1000637623	F004132	GAG	MTQEQLSVPYNPNLLVTYKSIPGTYAAPESPTFMTDKVTEIEWDLHNGRAAVDELSRKRLDIAWLEDQVGEWYDPNYTKDEVLQAIIERFGFNPTKEIQVYGTVNFSGTISIPYSEVEDFDLSNVTIDAELSSYEYEADLIVDEISLEEN
Ga0214917_1000637629	F003393	GAGG	MIDLENDDTIQIVDYVKVDVLTSGQLEIDDCILIGNEVVSIVDIVSLPDGYTLEVVNDFGERDIIEVGEYEQFDLMMLQ
Ga0214917_100063763	F017788	AGGA	MKKIIITSLLIALLIPSASAQAATKSLNTKGNKASCKSIKTKYESELMSKWSNGLASDQDVLKEIDLNIDMLAAKQKSTTGKIKKTIASWITAEKNTKIALDSKNVEAITAAMNLKISSITNFDKLCKSIEK
Ga0214917_100063766	F020851	N/A	MSEDIVDLAISMAEIDTGMQIPLEEREAMKQRILARIKNLNE
Ga0214917_100063767	F037701	GAG	MIRTKEWRVTNRSWLSVGFAPHRIGLGFHVDRFCINIDFLWFWITLEY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10006376

Overview

Ecosystem & Geography

Associated Families

Sequences