Scaffold Ga0214917_10006121

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10006121
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12618
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011143	Metagenome / Metatranscriptome	294	Y
F020143	Metagenome	225	N
F026865	Metagenome / Metatranscriptome	196	N
F045093	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000612112	F011143	AGGTGG	MHKIEIVKKDGKKLTYDLTPSAKVAFEAEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTDLAFGDDYINQYSDVDLIYDSKNG
Ga0214917_1000612113	F026865	N/A	VSVATGISPKDLLEVDPAIYSAIKAILQEKYYNNKKATVRRK
Ga0214917_1000612114	F020143	AGG	MKPFYAGLPGRQKSLAALPSSIYVENLDEILEKMKKMDPDLQKEFRRELSKAVKPVAKLAQSFVPHEPFPGWRDIEPSYPPAWGWANDQVHRGRTYGESKRSRWKWSQTEVIRGIRVSTAKSKVQRIKGATFGVTAIAVINKSVPGIIYELAGFGTSKSKGRTRRTSRNPNASESFIGKLQGTSNSAGYKEKRLIYRASQQLGGQVNDNMITVLKKYLGKEFRG
Ga0214917_100061212	F045093	GAGG	METQNAKQLKIVASGKPKKKLGRHTAAMVKAITGRNDIDTVKREMLLGLARAWDRIEESGKGTHTIPSISKELREIWDSCALPDEDDLFE