NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214917_10006104

Scaffold Ga0214917_10006104


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10006104 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12646
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (40.54%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F000744Metagenome / Metatranscriptome909Y
F004314Metagenome / Metatranscriptome444Y
F004898Metagenome / Metatranscriptome419Y
F024724Metagenome / Metatranscriptome204Y
F027765Metagenome / Metatranscriptome193Y
F032934Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000610410F024724GGAGMIRIKYYYKEYPNTTLSVFLKNEEQVEAFKAKHPDYVYIDE
Ga0214917_1000610412F004898GAGGMDLSELIDELREIAIYESDPQDWMGYMETDDFLVPDSELAY
Ga0214917_1000610415F032934N/AMPILIKQFYNRWYLYWADNGQKIASFATQFEAYSARRFMIEYGKKEKLY
Ga0214917_1000610417F000744GGAMTDIQVNLNVHEIGVILSALQLVNLPEEQIIAREYGSVSALYNKFYTVFEQMDRSSILLKNDVTPSF
Ga0214917_1000610420F027765N/AMNNENIQQSMTAFQDFMKHAELEQFSHSAWTVAKQYADQYYEQKAAELEITVDYYIQEFV
Ga0214917_1000610426F004314N/AMYDDYDIDYTYTNDYADLEDYHVLGALDLDEDYARDGHDYQDLAYRHYA
Ga0214917_100061045F000345GGAGMNEENPVVSSEELQKPNNLGKSLQEWWNSDAYKEMQKAHQESLEKAVGKYFMLSESDKLDMVQAICYIMCKAESEGTSHRGLMNELGIYPSGFWIDHLMDVHNSLWSYYHDKKIEQELEQDVNKLKAFLENKNETPNESGDATGTH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.