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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10005998 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12775 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (90.32%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006653 | Metagenome / Metatranscriptome | 367 | Y |
| F035651 | Metagenome | 171 | Y |
| F037608 | Metagenome / Metatranscriptome | 167 | Y |
| F055298 | Metagenome / Metatranscriptome | 139 | Y |
| F068601 | Metagenome | 124 | Y |
| F087106 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1000599814 | F055298 | AGGAG | MSNSNPLVDHLAVTGYRASGVSTDDLTSFIESFASLRASRVRGVGADQYAIAQGQKFESFTTSDTIKELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD |
| Ga0214917_1000599819 | F068601 | GGAGG | VRINESQENIVALSDIREEKLRALSPYGPVKAGLTTLPSQGTVKEDPLARLSELLSSLESIVETLQYKSFTAYDTLIIALEGVRVALSASTEDTGGTDV |
| Ga0214917_1000599821 | F037608 | GGA | MNNVISFHPPKSSLILLYEVVDEWGNAEWGGNSEREALAWIANSRTATRILVSGWESDDEDAHLVGQPIDITAIVREASR |
| Ga0214917_1000599825 | F035651 | AGAAGG | MSYYDGDPWSNHELNELKCAECGDYFDQQDKEGGNICPVCIDKGEGESE |
| Ga0214917_100059985 | F087106 | GGAGG | MAANENTKFQINYKLADGTLINLYASDVKELETGLTDLAMVALMIKSTAAELGGGNATAAAVQNIQAQFNTAPVAASSDPSVKMCRHGQMNFRSGVGEKGPWQGFMCAGPKELPKSEKCDTIWIR |
| Ga0214917_100059988 | F006653 | GAG | MSEKELSNKYRDKVTLELLRVEADALREDVNTIKVDLTNFVGALLQSGVVELVKDEEGNLVYKINKVVLVDEQPEVQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |