Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10005478 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10005478 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13548
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (48.39%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13548

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (48.39%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002060	Metagenome / Metatranscriptome	597	Y
F008814	Metagenome / Metatranscriptome	327	Y
F028150	Metagenome / Metatranscriptome	192	Y
F040629	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000547810	F000473	N/A	MFIDKDKNHFKHGINQWTGDPNKPVFYTPEMSKAIRGITKPANNLQMDIVKYPEFLAIRLYEDNFVQFEGVKKEMVIDYVAKVKKLLESYGVRCELEGVPSERILR
Ga0214917_1000547812	F000671	GAGG	MDKVLCYCCNKTKNKLNLKKSTLLPINLFMCDGCIESKFEPRWLVIITGRQNGPESVREFVLKKKYVGDEISASELLI
Ga0214917_1000547813	F002060	N/A	MNLDLNSIIIAISAAILSGMGTAIIAGLNENKREKNRKQEREQDHLKLEVKDLKIELYKIEKELTEWKDKYYSAIQELILIKSELEDALRSLSEMDSNEVLDR
Ga0214917_1000547818	F008814	N/A	MANMTVLEEIIKEIGEELYQKWYNALAVEDRTEESSKAMAINAGETTFWVVQTFMNKFNAAAEELKDK
Ga0214917_100054782	F028150	AGG	MNMNWLKKWGFAALNENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFMTIGIREKAEKED
Ga0214917_1000547827	F001280	GGA	MCYECGCESVGSETGIASVSILDVTRDGEAGLTLNMTSTPEQTRQFINE
Ga0214917_1000547828	F001176	N/A	MSENGTGMATPPNNEPAGAVTSQEATRKNPSQGKFRSGIANQRSLTRVDRNKHGIRRETNMGPKKTGRPKKV
Ga0214917_100054786	F040629	N/A	MNVYKAKLEVEIEINAFNEDDAKDYINDIFGTDDEIKNIKIINVKEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10005478

Overview

Ecosystem & Geography

Associated Families

Sequences