Scaffold Ga0214917_10005324

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005324
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13787
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F057984	Metagenome / Metatranscriptome	135	N
F096882	Metagenome / Metatranscriptome	104	N
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000532412	F057984	AGGA	MGGIGQIRILGQRKVQMVELDIQVDDDTKNKVCHAALREITSDGDALFSYGFNQALKRLIATKGKKCTHKKSSSKRSSRR
Ga0214917_1000532415	F102824	AGGA	MTPVRVQRENGKWRVTTMAGNPIGPRLWGAIPPNGLPSIEDLFDDKTKAQEAADLWNAYAAWCQERSGKRKRR
Ga0214917_1000532417	F039993	N/A	MRIALSWLLYHIGNILSYGVSRYGYGYSLYNKIMLLSSDLDDKGIIWKDVK
Ga0214917_1000532420	F039994	AGG	MVLVKEVCSARDEAVMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDRPVFDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVVRALFAWMQLKKGLPRL
Ga0214917_1000532424	F096882	GGA	MANYQRSLKESIKAWRTFEKALHNLDGFDACAKWVIDHPEICKKLSGQGLMAVMKEDLKKKLD