Scaffold Ga0214917_10005078

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005078
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14199
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (25.71%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F006018	Metagenome / Metatranscriptome	383	Y
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F016151	Metagenome / Metatranscriptome	249	Y
F019476	Metagenome / Metatranscriptome	229	N
F020529	Metagenome / Metatranscriptome	223	Y
F022636	Metagenome / Metatranscriptome	213	N
F024047	Metagenome / Metatranscriptome	207	N
F042296	Metagenome / Metatranscriptome	158	Y
F045085	Metagenome / Metatranscriptome	153	Y
F072270	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000507813	F010081	N/A	MKEQIDSIIKKHCLKMQEVDNTKNIPMVVKELDGIVYTMYRELYGLRDIRADNYYLNSFTADNKKGHCC
Ga0214917_1000507814	F007859	N/A	MKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSKVHTINNKYITYSMVEISTNNVYTAHTNYYRAYYNCDGKIIKTTPNN
Ga0214917_1000507815	F042296	N/A	MKLYKNIIKWTGVIVYAAFLATVAYAATMPEPIKLYVIYTYKFNERVIEKIYIKKENAQKYCDLYKDSHNYTFEELTISE
Ga0214917_1000507817	F009135	N/A	MNKPKYYLTVNLPPNFDDVDAESIKTDLMAYINSKNQYGAMYGPKSHKKGITIDKVSYRTNED
Ga0214917_1000507819	F024047	N/A	MTNVKKSDIVDWLKNIVEKKMVKELNVPNAKVYLSCDRPHPDVILETKNADGDLQIVRFLVI
Ga0214917_1000507820	F019476	N/A	MNKTKSARIVLDIEWESADDSDLPSLWDWKRIKLPMDLTKVKYVGIQQSNGPENVTNWMG
Ga0214917_1000507823	F072270	N/A	MKLEKIPLAKFLSHLTNISPLEYLIELLPKCTENGPWIAGGSLHRTYRKLPLTNADVDIFFKNKEQFEKFVTAISLTSLFSGNTIESTIYSEWHCTLTIKYMDVDWKIQCVTFKYFDNIEELFKSFDINVCRIAYDGTNVIYEDGILDDIKTNKLKFNEGSIYYPSVTLKRLVKYVKMGYDIEDVDLKMLTHAFYKSKKKAIDILDQDLLTKKPIQTYEGLK
Ga0214917_1000507824	F006018	N/A	MKKYSIKTNDIGMCMSVGCDFYQTCTNNSVNMFYKTKRKFEPFLDGTVCLSYSSGKNTKDYADNCYPNVLKKIYEYQS
Ga0214917_1000507828	F020529	AGGA	MFSNKNIVKYCAKYFVLMSVGAYVFNTSVIFINQKSDIANLIGSALFAGLFVGTLLILKSDVTKLVKNIRKEENE
Ga0214917_1000507829	F022636	N/A	MSTYRRATLQDLAKLGYVPNAQKYSEHIAFAKKYYPPEATTMVMSIHSEYNDSTYDNSFQYIIVYDMDGNELPPLKKTAKECREHWTTEYLPIPNTSHGHYGASESDEPLEDVVIPLTSEVPELYIKEN
Ga0214917_1000507835	F016151	N/A	ECLNEIDFAPGFRPTHDLTIVSTVTGSDVDDLKTYILELHRILTANFGNDVQFEEKLNMSMLSNGDKKIETTFTIIDIIDDLMSKTVRENLQDIHEQLTMWSINQDLVIDFTFKIKK
Ga0214917_100050785	F045085	N/A	MNILCKLIDLIIGLIFGTIFALGLILVLCIFFTVLIPFLFYFTVKEVVKQLTVIK
Ga0214917_100050788	F001840	N/A	MKDTDSIFLICDCYEHGLLVEKFNDENEVSLSLFERGLKGRTLCWSERLRWCWQILRYGKPWSDFVILSEENQKQLKEFLNK