Scaffold Ga0214917_10005014

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005014
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14306
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F001176	Metagenome / Metatranscriptome	756	Y
F044481	Metagenome / Metatranscriptome	154	N
F084138	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100050141	F044481	N/A	RLKFLLGITLGSILFLTTIGILYGLLFVTQPVGAQSENDKMFFNVLGSVATFITGTLAGLLIGQSGAKDIMKAQLDNKEMDAKNTQADKKLESELAINELKADVEADAVRARLANKPDGAMPAEQPVDTDWDKN
Ga0214917_1000501415	F084138	N/A	MANQVTILEEIIGDVAIALYQKWYNAMPVDERSELAEQALKKNAQESALFVIQMFMDKFNEAAEELKNQD
Ga0214917_1000501423	F001176	GAG	MSNGTGMDTPPNNAPAGAVTSQEATRKNPTQGKFKSGISKPAVKIDRNKHGIRRETSLVPKRTGRPKKV
Ga0214917_1000501435	F001019	GGAGG	MTNYAPSLEILEVNYSVSPGGVDTFEVYDLDEPMSIPIYETESLTEAVQYCYNLGKDFTVRTYAEWEMRQLLADI