NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214917_10004813

Scaffold Ga0214917_10004813


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14788
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (47.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F014229Metagenome / Metatranscriptome264Y
F028084Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000481315F028084N/AVKKLILILPLILLISCSEPNYESRELPTKYPETPTMGSADDVTKELYKK
Ga0214917_1000481317F010817AGGAGLKKFASVLVLNCLLVGCATVTPNKIEDDKSSYDATTPKQYQKDNGGLISFIGDDALITSQARERYNNLISMYKIKFKKEKAIELKTDFGIKPYKDNFNNELYIIDSEHLVYFGVLNSWLKEKVPQDNIVDKVIDKVNN
Ga0214917_1000481319F014229GGAGMNKLQLAAVALLSVFLGACAITPTGQVDPATSVSNALPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTVGTAPTPEQLQKALNDYLPEEKTHWVNYVSVIKDIYAQQFARLDGNTALAIKVLNAIASGCKDATANYVE
Ga0214917_1000481320F009669N/AMRIMLSKIFGPNWRSSSSGVTTVVAVCTAIAIHSDPSLVAFLPDKAEVYITGISKLIAVVSGIIFALTVKDASVTGGTVAQTNEAKDRTNGENIXINYN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.