NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004201

Scaffold Ga0214917_10004201


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004201 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16180
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (82.35%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011142Metagenome / Metatranscriptome294Y
F013741Metagenome / Metatranscriptome268Y
F035668Metagenome / Metatranscriptome171Y
F059760Metagenome / Metatranscriptome133N
F068428Metagenome124Y
F102815Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000420120F011142AGGAMAQVKVTGKVNKVFGASNQGLSLVESYKSATGEDYTRTWTVWFAVSHNLAVDTEVTVTGQLSVKIEDFEDKTGKPGRKVKLDVNNAVVAETKPAVPADLPF
Ga0214917_1000420123F102815AGGMRSPEELFLDAVNAYKAWVACGKDFLNHAHLFEAWDDAVTAYGQSVFLERNRAVHQVLQGLEMIK
Ga0214917_1000420128F059760AGGAMSNPETKEQLVSNTADAITSAIQSSRDNAVEAVISIVESYKKLQLPAIPKDAYDLGARDSIDTLLIHLNKFAQGLKQGRTE
Ga0214917_1000420129F035668GGAGMTCNNCQDGCKCARVNSVNIFSRDYKAGQAHGQRDEHTRTSDALIELERSGVITNAQMQAILDLILEKLTDAMDIP
Ga0214917_1000420133F068428GAGMLEDLQLPKRQTSCRIRTIKADLSDKDKTIFETAVMSPEWPYKTLSNELYKRGTKVSDAAIKHHREKRCSCWKD
Ga0214917_100042016F013741AGGALSEPSKPTNQTLLLQIVRDIEILKANSIQILEASRDHETRIRELEKQINRSAWIPALITAVVTSVAVVLLKGAFGL
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