Scaffold Ga0214917_10004018

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10004018
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16671
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (67.57%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024501	Metagenome	205	Y
F033721	Metagenome / Metatranscriptome	176	Y
F037622	Metagenome	167	N
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F057984	Metagenome / Metatranscriptome	135	N
F091592	Metagenome	107	N
F098923	Metagenome	103	N
F102823	Metagenome / Metatranscriptome	101	Y
F102824	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000401817	F102823	N/A	MNEKMNILMEWIAVGAGLAIGRLLVAIAVITIVTAILAVFFIMEERSK
Ga0214917_1000401820	F098923	GAG	MYYEEIDRRHIKALENILAEGQCEPGRLMGEDAGHLAYIMNQMLYDKFHGHGWELDLLTGRFVRKTGE
Ga0214917_1000401824	F057984	GGA	MKMHKLGKIQITGERKVQMVELDIDVDEETKNIVCHAALREITSDGDALFSYGFNQALKRLIETEGKKCTKKSSSKKRSRR
Ga0214917_1000401826	F091592	N/A	MERLRFVVQRAQREAKAQMISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRVTKNQIGRLSDCNCYRDVKEVRSLVRDIKNGTVLFWCKVAGVRIDQATLNRVIKRGVGNVN
Ga0214917_1000401827	F102824	N/A	MTPVRVQQEDGKWRVTTMAGNPIGPRLWGAVPPNGLPSIDDLFSEKSDAQNAADLWNAYALWCKERSGKRKRR
Ga0214917_1000401829	F039993	N/A	MKLALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSDLDDKGVIWKDAK
Ga0214917_1000401830	F033721	AGGA	MRWIKKELDNEGKLEWAVYIDQTGESNESEWSHFDTYKTRDDAVQACWHFTWEDYDCSDK
Ga0214917_1000401831	F039994	GGA	MNPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVVRALFAWVQLKKGLPRL
Ga0214917_100040188	F024501	GGA	MDKKDKHMTHPKQLDEVGITESYLRKMAKKEVVSYKRAVQIAMEQWGEYSLKLINKMMAEEIKTR
Ga0214917_100040189	F037622	AGGAG	MTEDQIIKAYLSRLGKKGGSVTGPAKARKMGKEHYQMVAHRQRERWDKWRLENGRPAIKRER