Scaffold Ga0214917_10002440

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10002440
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22567
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (69.57%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Associated Families: 17

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F012433	Metagenome / Metatranscriptome	280	N
F014488	Metagenome	262	Y
F023833	Metagenome	208	Y
F026543	Metagenome	197	N
F033350	Metagenome	177	N
F035218	Metagenome / Metatranscriptome	172	Y
F041645	Metagenome	159	Y
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100024401	F100669	AGGGGG	MTKGICDLRKFLHKAQVRLTKAGSLIIGYLRKIESIVRGINKLGDSYNAKCTQNRFR
Ga0214917_1000244013	F033350	GGAGG	MSIDVDVPNLKWSMLEWKTIEEKPKNDEKVLMDIGGQVCVGRFIDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0214917_1000244014	F023833	AGGA	MKSHSELIQDIINDAMSKAAALERERCAELVQRLADGTEDQVIQDILNEVVVALRRLG
Ga0214917_1000244019	F005702	GGA	VIFGLIIFVGLVIVRGLYMIAQHIDQQNYERRRFYLSVAADLDRLDKIVAEGNQPKKPELVLPTKNWVGRN
Ga0214917_100024402	F007164	N/A	MELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPAQWTPAQRTQFLEEARPIVEAYKEAGGEL
Ga0214917_1000244020	F005846	N/A	MTSLPLPARPVGSVVPASHDEFSDGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVQLAHHKINSIWEEMNFQNNKAGEVIWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW
Ga0214917_1000244025	F011284	N/A	MTSTQGVEKTQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEENQGTKLWEMPTARLVEEAIAEATDQMVYLLSLRQQMHIVMELAKEGCTDETLTNPRARECCNLIYTTLTGQSKPTL
Ga0214917_1000244028	F012113	N/A	MEEILTFIQSQDVFAWVGALVALLSAVIAIASLIPGDEPEATLTKVVSFLSRFSRK
Ga0214917_1000244032	F041645	GGAG	MASAIIGSAIDSKVLQRQNFSKEPNGLDTIIEAYAIKTANRDAVIPVKNTLHSAFSSSSKTYSRMAVESVTTEEQDGGITQMLVTFVGLTTSTGLPPAIVRIIPTAGEGVYGPPIVIEAEYITNISETEFVRGLPPQNSGGVIPTASFKMPESINGTSMPRDPRPPFYSAPQSGSGVIINYDGYCVLAKSCERRGLFLIARDTFHEVQTIAVASSGRLR
Ga0214917_1000244036	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGAGAEAKAEMERTWAEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL
Ga0214917_1000244038	F012433	GAG	MSADQVAELQERLSTVREAIARIEERQQNIISVLERHTSELAQWTNKINTKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKIRVFPR
Ga0214917_100024404	F014488	AGTAG	MNHHQGQDPADSILASYTPNMADHIDTLEDRVKERLAQMKAMNPMIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDEALLALASNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNAEAWAKGIKKRGKKR
Ga0214917_1000244040	F035218	AGGAG	MPLTKNPSNIDSFLFASGRMKMYRVGLAGSYAKITGTGGVASIGNSAGFNINVNAGSSASGTSKVGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYLASTNSVIRIVFGGTGNSVDAPLAGVDGLTIKGFGAEFALQSGVIQARLIGYNASYLTPTSYTTLTNGFGLSASDNRFFGVIIESDGAGNIYLYGADSQTNPAINIGQTPLLTLTGGPTNDTSTNRFGPEIQCSNSSSSPTASPSAIIQSTHWLLDVQ
Ga0214917_1000244042	F009142	N/A	MTNSVQINVEDALDNILANVSGLNVYKTNRVGAKLFPFAVISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEALYSETPPLFTKIQSNIVDTKVYTARITGQTPTIRTAKRAWQRGLKISLICTPSELDDGLRSLNFFEKQNSMYVAII
Ga0214917_1000244044	F005584	AGGAG	MAGSIPTSYFATDLTFMIQDLYQSVTGLGSTSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0214917_1000244045	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHDVFELTSYVKAGHRQGDIIDLEVWPNRYEEYRKSRRSWTDFVYSHPEIKDADKTNIVLDKLDEKPAEGLPESYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPAEIKIQGLNTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRREKQTGFFPQKDEWETDNIFSFEGMITMD
Ga0214917_100024409	F010463	N/A	VIAHPQELVLAATIHRVKLCEDKLREFEQMVTTLTATMAQNRAELASQGLEKLVMGVTTPLDIPKELVPTYGKGGARRNREFSTVKKRWTLWKHQLDSGMSMSELARAWGVHRTTIMNAKSRNFSVRKAKGGSR