Scaffold Ga0214917_10002320

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10002320
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23380
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (90.91%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F006986	Metagenome	360	Y
F011391	Metagenome / Metatranscriptome	291	Y
F019319	Metagenome	230	N
F020354	Metagenome	224	Y
F031461	Metagenome	182	N
F041770	Metagenome	159	N
F080025	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000232011	F019319	AGGA	MTKKDIEDAIAFLEKIFVGPGSQDRLFELIKSLKDELARRAKK
Ga0214917_1000232019	F006986	N/A	VSVVLVTWHDAHSGAESWINIKDLDREPAVVESVGFLLNEDNGGKPNHLTLFQSRMEDSVDHVLHIPVGMVQKIKVLMELDINI
Ga0214917_1000232022	F003378	GGAG	MVEEVKIKQNQTIAKFLDLTQRLFSLFLANALPAVTTGAVIGISVAKSAIMAGAMAVIAVVQKLATASVDGELTSEEIKEAFTGAKKK
Ga0214917_1000232023	F020354	GAG	MIRKLKDELFALGFTLGASAITIMTLSGTVQNWALIFTFLSLALHLAGVISKDGENDGGRSED
Ga0214917_1000232024	F031461	AGG	MVQVLADQAPAQIVATIQQVLTADITSDQAVVIASSAEVLAAVTEEQAEAIFEEIVVDELTAEVAEELVAVLNEAPTKVKKKFQETINVFAGVFDSYKMVGSTIPVGERRTLLAVSNTLVAVGASLRRRDR
Ga0214917_1000232037	F011391	N/A	MAKYQVVEGFTVLGKQYPATIDGEEFDHLDSLLQSGRIVLVADKSTSKAETAGDK
Ga0214917_1000232040	F080025	GGA	MSIAVCVTVWGDFWDRFGGQFIEQMEKLNTEPDEVIVSSPVPLNLPKHWHEIVQPHHKWNNWNDTMFAANSDWVMPVGMDDIWFPDALDGLTDVDEDVKIISNPWMQDGQVWAATEEAFNQILHVSHNPMVGGSLIRRSVLWSIPYRQVVWNDWIQWMEIKKLGYKVAFRGNPCGDHIRRSDSYSIAPKANGELECEQMRAILRQHEVVPGVEFPPRILK
Ga0214917_100023209	F041770	AGG	MKHETVGADILLEAHLLVTGARQDSYGNVTEDYSKVIAIFEGLTGVKLSIADALLFMVSVKLARLRTNLDKNRLHHDSLLDTLGYLGLLNQAYNDLPFPRTVAEK