NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10002004

Scaffold Ga0214917_10002004


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10002004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25416
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (37.93%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F014229Metagenome / Metatranscriptome264Y
F028084Metagenome / Metatranscriptome192Y
F091423Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000200411F028084N/AMKKLILIFPLFLLISCSEQNLDSRELPTKYPETPTMGSADDVTKELYKK
Ga0214917_1000200414F010817AGGALNKLASILVLNFLFIGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFIGDDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDSGITAYKDNFGNELFLISSEHLVYFGVMNSWLKEKVSQDNIIDKALDKVN
Ga0214917_1000200415F091423GAGMPTGILQAFLSAVSGIFSAINNLFGAKNTKEMKERQEAQKEVDHQSGIENAVKEKDLEQARKHISS
Ga0214917_1000200416F014229GGAGMNKLNLIAVALLSVFLGACATTNTGKVDAATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVEGLTAGTTPTPEQLQKALNDYLPAEKTHWANYITVIKDLYAQQFARLNGNGALAVKVLNAIASGCKDATASYVE
Ga0214917_1000200417F009669N/AMKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDKAEIYILGIAKLIAVVSGIVFALTVKDAAVTGGTVAQTSEAKDRTNGENI
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