Scaffold Ga0214917_10001920

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10001920
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26058
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (65.71%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F008938	Metagenome	325	Y
F009142	Metagenome	322	Y
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F025739	Metagenome / Metatranscriptome	200	Y
F026543	Metagenome	197	N
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y
F048161	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000192011	F019102	N/A	MSISLEEELNSAFISPDKEYMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKGRKEAIKLAWNRDLFREKIMDFIEGKTEADRDAATQIVSNILDEAQKGKVEAIPVPHQAELGNA
Ga0214917_1000192012	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSAQATFWFEAGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL
Ga0214917_1000192013	F006138	GAGG	MAAVTIGTQGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNSGDIVAIGYYNATTSYSLSVAITGAYTVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0214917_1000192018	F009142	N/A	MNNSVQINVEDALENLLANIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKISQEAFDSEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRYLNFYQKQNSMYVAVI
Ga0214917_100019202	F025739	AGGA	MKRLLTTAVCEMRKWILGYIAASLLCGCVTTRPYDIGEVPNQDSISDYIMRWDKLDRTKSTPEEYRQLFGQSLKTISRLVEENERLRKRLDQ
Ga0214917_1000192020	F005584	AGGAGG	MAGTIDTSYFSTDLQFMIADMFQTVTGLGSSAVSASVTDLTTASELEIGGEVFRVTQSVVVLASAISAPTIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0214917_1000192021	F008741	GAGG	VAKTIKYSQRLGDVLRCLPACKHLADQGHEVFFDCFAQYHSIFELTSYVKAGSKGDILDLEIWPNKYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPETYNLVSPFGLSQGYYRNPLDLIVRARQTMGKDSFFVLCPADIKIQGLNTYTATSVEQMAKAIRGAKDFWTINSTPIVLASVVRRGKPTGFFPQKNEWETDNIFDFEGMLRMD
Ga0214917_1000192023	F003049	GGA	MKNANQIIGCRKAKKGEDTKGLGMIKFGKSRPCKTKYVKVDITYDDKAKKELFEAGMLALQHDPEAVIQYVIKKALCELVKK
Ga0214917_1000192033	F048161	AGGGGG	VILGLKIGVGIVLGIVLLNVAFWACIIFAYLLATLFECIGKWINK
Ga0214917_1000192034	F008938	GGA	MIRQTDLAQKWNVSRAAISKFVKAGMPLTSVNAAERWKLSNQKRVSKTEISLIPSPNSSEPSKDSDAELSVSKTSLGRLNRAKNAEVVAYSLVATAATNKNPVAMRAAVQGWGEAKKRVAEAEMEHARWEEVSRVTVRMGEVQEWITKWHGAIRSLLDALPSSLATRANPSDPECAKQAIQDGINQIFVTIQKAEGAFK
Ga0214917_100019206	F035669	GAG	MRENQINELQGTSILTKEFFNKLIRRIECTKPLAGSGIAISEKENGFEISGGGAITLNVCSNGTPAQILVFGQPV
Ga0214917_100019207	F041645	GGTGG	MASVVIGSAIKSTITSKVLQRQNFSKEPNGLETIIEAYAIQTANRDTVVPEKNTVHSAFSSSSKTYDRMVVESVNTEEQDGGITQMLVTYVGLTTPSGLPLPVVRLLPAADKGVYGPPLVIEAEYVTDVSETQFLAGQLSQGSGLERVPIFSPTTKMPASINGFVMPKDPRPAFYQAGTGAISNYLGYCVLSVSCEKRGIFLVARNTYAEVEQIAFIT
Ga0214917_100019209	F025225	AGG	MLQIDLLNQARFSHKLQQFSKETRRNMAKVINNQLGNVAVTAIGTTYRTNTSQIASEIQRVEGKVVTKKVFKPFGLTKSGKIKKRKIGEYVVGYKAKSVSYAGTYKLVNWLLKNRGLATLGKTKVGVGGLGMGGGKPGKIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRAKLTRGDYSLEAIKRLGGGELADGSKPHMEGMIFNRAGDLDTRYYPVRKRAISGAVKVGIPGLKMAIEKVITKMNVELAGLNKTTSDKLKL