NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10001330

Scaffold Ga0214917_10001330


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001330 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31837
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (81.48%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F015731Metagenome / Metatranscriptome252Y
F038244Metagenome166Y
F047674Metagenome / Metatranscriptome149Y
F054028Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000133015F004344AGGGGGMDGLQIKVKTTDGFEGVFSLTPRIIVGFEQKFGKGFAKLLSEEQKLEHIYYLGHAALAANGKVVKPFGNGFLDELVSVELVADPNSESTEIA
Ga0214917_1000133025F038244AGGAGMPISSAQVTVTTSPTLLVAGDAQAEQVNLHSSSGTIYLGDSNLTSSTGYRMDNGDKVVLQNHENAIYGICSSGTALMSVLVITK
Ga0214917_1000133036F054028AGTAGGMKLVPTNEKVQIKWFWVTTGGEKYRNNKGFIHNAWDVTCSCGWESRSGGAIKASMIREVEQHKMYVHNYSWKVGA
Ga0214917_1000133041F015731GGGGGVTVEIEKGIVDFDADANAWLEQYKAALLKIKEWTEVADIARSHLEAALGDAQVGMFGNRPVIRWSVVESKRFDTKRAREILPAQVIDLLEVVSTTRRFTVVRDDE
Ga0214917_1000133052F047674AGGAMDTDTETIAEIDEALAHAIASRKTTIDSKKHLVDKFIDDLLDSRLELSQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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