Scaffold Ga0214917_10001174

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10001174
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34018
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (81.82%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F011482	Metagenome / Metatranscriptome	290	Y
F019308	Metagenome	230	N
F027488	Metagenome	194	N
F035280	Metagenome	172	Y
F036203	Metagenome	170	Y
F042308	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000117410	F036203	GAG	MAETQQPMSSNDVGSVTGSSSKARRARGVSDAQDVSPKINQDNFFKDLDSLVGIGREQGGCSVGILVSKLDEPIRSKLIQIMKNEKVNSARLAEVMLAYGLQVSSSDVLRRHRRRLLGKDGCKCPRES
Ga0214917_1000117421	F006261	GAGG	MATISSAYTTTVPIQITNPAQWSFTAPENPTIRITGIDVLQPLNSTIVESYGVFKPLGASKTVVVSQSLYGVDGTYEFVTTGETEWDELYPVLTYQGTLHVHDPLGRQKYVRFVERNWTESGKIGSLVRKVKVTYYEVEAP
Ga0214917_1000117426	F011482	AGGA	MAEEIQPTLGEVMRRLDDLTMEVKQMNLNVSQTYLRKDVYDSDTERISQAMEHITDRIQKMESRSEWVIRTVGALFIATIVGASMYVGQIIGF
Ga0214917_1000117430	F027488	GGA	VWSDSPYDGTKLLIHLALADISHDDGRFFASQSNLASKGRCSVEYVRKVINEMITDGHLKIITKGNSRGNATVYQLIWKKLPNSVGEEESLGGVELPNSDTPNSPTLEVQLPNSTPYHPSYTSVLSTTKSDETAVAVVALSEVVARRWWEKQRVKPLGKNAWHSLLAICQAAEKRGYSEQQIEQALDYIGTVPSMRQMDLVLRGVGVRTKHEQSAMRAVELAKKLENESI
Ga0214917_1000117439	F035280	GAGG	MEKKIGRYWFAWGRTSGFALGLSIDKHHWTIDLGFWYIGQEF
Ga0214917_1000117445	F042308	AGGAGG	MGWDVTQVGANITTKKFIEYYIRSTYDGIYEAVRIFEGKNVGGQKAFYVALRRLENNSVFACVFLTKRKNGQFAIKVMGEDEEPFFYEAPKSFIKVLTPAKTYTGAWWRNKCLEKYQELANA
Ga0214917_100011747	F008607	AGTAGG	MDAIYTKVAEFMLDSATFYPKSTVDKYNKTTFSVSGTTITGRLIYDTVKSRDVQGTEVVDIGRFVTYGPYTSITVNHKMVVGTDTFTINSIDNIKDENGDHHTVIRFGR
Ga0214917_100011748	F019308	GGCGG	MASKMGVSFDLEGDKALIKALKDGKDRSPQAVAQAIWEEANTIFAKSQILVPVDTGVLRGSGGVSAPQMGNQGYFVDIFYGGPAAPYALYVHEIIGNYHNPPTQAKYLEQPLMESMNGLQERIKGRIIDIIEKGSKG