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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10001130 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34856 |
| Total Scaffold Genes | 68 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (72.06%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F000868 | Metagenome / Metatranscriptome | 853 | Y |
| F001562 | Metagenome / Metatranscriptome | 670 | Y |
| F002071 | Metagenome / Metatranscriptome | 596 | Y |
| F005531 | Metagenome / Metatranscriptome | 397 | Y |
| F008305 | Metagenome / Metatranscriptome | 335 | Y |
| F010085 | Metagenome / Metatranscriptome | 308 | Y |
| F024549 | Metagenome / Metatranscriptome | 205 | Y |
| F030758 | Metagenome / Metatranscriptome | 184 | Y |
| F038205 | Metagenome / Metatranscriptome | 166 | Y |
| F038669 | Metagenome / Metatranscriptome | 165 | Y |
| F071228 | Metagenome / Metatranscriptome | 122 | N |
| F084217 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_1000113020 | F010085 | AGGAG | LRRIQYVSQYIALSEDGLVPRLECPMDQGLLQSNLDLEDNIYLYCLSCSYKKFIGEKLYNDMKERVGKNV |
| Ga0214917_1000113031 | F084217 | AGGA | MNEYLNYLDEVYDDLVSEYGEGITFAYHVANEKEM |
| Ga0214917_1000113033 | F005531 | GAGG | MKITITYSLWQGGSLLSVGNKAESADDLLAVMAELNKLGNGFTYNIREVEVK |
| Ga0214917_1000113036 | F001562 | AGGAG | MKSQFEKDLELKESFCQMLDEIYPTYKIGHSTFTASEILECCDPIAFSIGLIEHEDYLKETEN |
| Ga0214917_1000113039 | F000447 | AGG | MGYIEIFRMNDEGAGWVDLDEATPDELFNIKIGLLNEGAFD |
| Ga0214917_1000113040 | F038205 | AGGA | MGNILEILAVECDECGGAGFVFWGDENNYDVESCDCSLDKWVI |
| Ga0214917_1000113041 | F024549 | N/A | MYRLDTWYDGELEFTHKFSDALTAFEAFAKCYDVGFANEFATYNLSMPDGKMYTKNFSRLGLVSIK |
| Ga0214917_1000113048 | F002071 | AGGA | MNQTLEVGQTYTTTTSNVVGIIKAIDNHPSGVSRILLDVEGKERWTSLTN |
| Ga0214917_1000113054 | F071228 | AGG | MSIETYNPNLLVTYKKIAGTYAAPEEPEYITDKVVQIEWDLDQARRVVENFNNLKGKVSQLEDLLIELYNPNYTKEEALQQIAELFDFELSKTVTVTGTIEFEVTVQVPLDDVENFDAHYKLGDELSLTAYGDDVEINTWSIQDTDVDWD |
| Ga0214917_1000113059 | F000868 | AGGA | MAEVSFLENENQMVIDAELQAIAEQLLDDWMNENLNEGTFYADWCIADRVDSNYLKGRFNKHYNLTSTDEHYIEYDEEK |
| Ga0214917_1000113060 | F008305 | AGGAG | MLGYTYKDIQAFGNSLTWAIDTAKIQGDEQNYKQLLIVWDFFEGLLAEGYIDENTFYG |
| Ga0214917_1000113062 | F038669 | GGA | MININGKLEPRLQKLVDMGETGTDIMHGHMKNLMYECETKLLEIGDSDNIADKFYFEGRMDALTEIYIMTYNLSFAINERAKQRG |
| Ga0214917_100011309 | F030758 | GGA | MATENKNFKVKNGLNVAGNATFDSSVILGETPLRFDTTTNKLQIQLNGTWSPIAFVADIPDPATEIGFMDIGLAIDYNGLPIYTVQANGVSTTATKFADGGAPSTSTYGLTFDSGVIG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |