Basic Information | |
---|---|
Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10000952 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 37889 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (45.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009669 | Metagenome / Metatranscriptome | 314 | Y |
F010817 | Metagenome / Metatranscriptome | 298 | Y |
F014229 | Metagenome / Metatranscriptome | 264 | Y |
F028084 | Metagenome / Metatranscriptome | 192 | Y |
F091423 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214917_1000095220 | F028084 | N/A | MKKLVLILPLLFLVSCSEPNYNSRELPTKYPDTPTSGSAYDVTEELYGHKK |
Ga0214917_1000095223 | F010817 | AGGA | LNKLASILVLNFILVGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDAGITSYKDNFGNELFLISSEHLVYFGVMNSWLKEKVPQDNILDKTIDKINN |
Ga0214917_1000095224 | F091423 | GAG | MPTGILTALLSAVSGIFAAINNVFGAKNTKEMKERQEAQKEVDHQSGIENAVKEKDLEQARKHISS |
Ga0214917_1000095225 | F014229 | GGAG | MNKLQLAAVALLSVFLGACATTNTAKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVETLTVGTTPTPEQLQKALNDYLPAEKTHWANYVTVIKDLYAQQFARLDGNGALAVKVLNAIASGCKDATASYVE |
Ga0214917_1000095226 | F009669 | N/A | MKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDQAEVYITGISKLVAVVSGIVFALTVKDAAVTGGTVAQTTEAKDRTHGENI |
⦗Top⦘ |