NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000952

Scaffold Ga0214917_10000952


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000952 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37889
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (45.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F014229Metagenome / Metatranscriptome264Y
F028084Metagenome / Metatranscriptome192Y
F091423Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000095220F028084N/AMKKLVLILPLLFLVSCSEPNYNSRELPTKYPDTPTSGSAYDVTEELYGHKK
Ga0214917_1000095223F010817AGGALNKLASILVLNFILVGCATVTPNKIQDDKSSYDATTPKQYDKDNGGLISFVGDDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDAGITSYKDNFGNELFLISSEHLVYFGVMNSWLKEKVPQDNILDKTIDKINN
Ga0214917_1000095224F091423GAGMPTGILTALLSAVSGIFAAINNVFGAKNTKEMKERQEAQKEVDHQSGIENAVKEKDLEQARKHISS
Ga0214917_1000095225F014229GGAGMNKLQLAAVALLSVFLGACATTNTAKVDVATSVENTLPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVAAIVETLTVGTTPTPEQLQKALNDYLPAEKTHWANYVTVIKDLYAQQFARLDGNGALAVKVLNAIASGCKDATASYVE
Ga0214917_1000095226F009669N/AMKTMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPSLVAFLPDQAEVYITGISKLVAVVSGIVFALTVKDAAVTGGTVAQTTEAKDRTHGENI
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