Scaffold Ga0214917_10000859

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000859
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39541
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (51.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F047649	Metagenome / Metatranscriptome	149	N
F083877	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100008591	F047649	GGA	MRYDRTYEHQCDFDEKNKAQKYLTEYRDKYLHLRKEVRNLVKEQNLTITPDFAKLIGLK
Ga0214917_1000085910	F001881	AGGA	MTDRAKEFMNVVWQHRNSGADTEEKLVAAVLQVAAETVKWYNAQNDMIVLDKNDMLQLAEELNQ
Ga0214917_100008592	F083877	GAGG	MTEFYVIMLKRQDGKVYADLHKTNQVIYLTIEDAYEELNSTEHFKENYHIVKLIACLDDLKK