Scaffold Ga0214917_10000743

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000743
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42668
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (82.61%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F018164	Metagenome / Metatranscriptome	236	Y
F020883	Metagenome	221	Y
F029734	Metagenome / Metatranscriptome	187	N
F053803	Metagenome	140	N
F064418	Metagenome / Metatranscriptome	128	N
F078625	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000074311	F053803	AGGA	MAVDIELTLDEILDGIRFIHLVRENKKQYEVTDKKFDRNNSSYSVNLMGQLGEMACGKGLGLQVDRTISPSGDNGHDLSTPLGKNIQVKTSTLPQLIFNAPELFISDIAVLVQFFGDKQLPHVDSKFTIVGYITRERFLAEHYKHDYGYGTRLVMDANQLQPIEELINELSRLQSSSLQGSGN
Ga0214917_1000074320	F000368	AGGAG	MNAKVQAAALSWFRAAAASAIALYLAGQTDLKVLATAALTGFLGPVLKWLDGSSTDFGRGAE
Ga0214917_1000074330	F018164	AGG	MPKIFRGPTYKYRPGREYDLWFVSYPIGKTVAKVNGVWKTMVVPYDPNLKTYDRVLRGGYDNVITDAEAAELTAAGYGDYVFNV
Ga0214917_1000074345	F078625	AGGAG	MFGKQGKPAKANVGSPIMGKKNGGAVKGGGNVKQGIITKGTKGNKNKLK
Ga0214917_1000074350	F029734	AGGA	MRTVETKTLTAVVKNGVVHVSKPNDKRIFAKVRITTNTAKSSKKIEAILGAFKAYPNFTTLLDEIQKVEPNAYLTLKGGRA
Ga0214917_1000074359	F020883	GAGG	MEASFRISQVENLLSHYSDAMHRSGMRDLAIWQSLESYYTRPDDWDLVLTSTREEAFDRMVKDHWHVDMGDHFFGIDYETTDELVLEYLKENKLVTDTTEQEEEEE
Ga0214917_1000074365	F064418	N/A	MGKPRPTEIKLVAKLLDPDAENSEDASALAIEIIEALDASRLKRESFVVVAKLADWAPLQAWGEFSTKLQAEKFFPHLSSPDKSGGKGAIAKLANPDEFLKMIGDK