Scaffold Ga0214917_10000445

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000445
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53983
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (40.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006658	Metagenome / Metatranscriptome	367	Y
F016639	Metagenome / Metatranscriptome	245	Y
F031080	Metagenome / Metatranscriptome	183	Y
F092055	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000044513	F031080	N/A	MEDTFWSEIYDAPGEIFDIPEMRDLDDENKFNIDEYINANYDY
Ga0214917_1000044523	F092055	N/A	MDQVFHYHTDWKEGKVNQMWIQQLGDADCGNLYVAIAYNPHKDVSMVMSKPRTSYRETLQWVRKFCGSFSILP
Ga0214917_1000044528	F016639	N/A	MLSLLAQGNTGAEILSILNALVADNVSSFDYIESPLIESILGISTLD
Ga0214917_100004455	F006658	GGA	MSTGELIDTPKFQEELSKPNTLRETLNSPEMVKMREELAQAHKDSIDKSVGWYYNLSEDDKYKAVEALCHIICKAEREGISHRGLQSTLGLYPQAFWIDGLMDIHNSLYTEYQERESKEWKKDLENLKNSSLL