Scaffold Ga0228703_1017642

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0228703_1017642

Scaffold Ga0228703_1017642

Overview

Basic Information
Taxon OID	3300022747 Open in IMG/M
Scaffold ID	Ga0228703_1017642 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2382
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9263	Long. (^o)	-83.4268	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020667	Metagenome	222	Y
F068753	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228703_10176421	F020667	N/A	MSVTLIAYPLNDSNTEVPYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNERCFGFAYNIQSFVGGFTPNKKIRAAMWEDGVQVFSGVLQLLSMAKTRGKVTYEVGLFTDDVGLYQAIEGNLLVNTAGVTGMNHTPTSGHVSGTWTASGSASSGYVYGVVDAAGFSDLTQGQVIAGWWQLGPSIYVKKMIDLIFTEAGYRYSSNFFNSATFGKLVMPYAAGTMPVNLSGSNVFAQATGTITALSGTNTTMQFQKDTPAPFYDRAGYWVASSSTFVAPTALPTLWNVNLSVKIGSVSGYSILAANFELYDTSTSTVLASLGGTTGVRSAPNKTIGLQFSNVTIPAGSSVQLRTRPTIIGGFGPSAFAMLSGSTVQWTCLQNPTSIGVLDMRTALPADVKQSDLLQDLQKMFNLHIMADSQDPKLLYIEPWVDFYASGAVDWSQKADENEEQILTNGDPNASTNLIFKYKDMGDYLSKTYKQSYPLAREGYGGKLFPTQNFYGKGDKVVETACGTLIPASFASDKILGRTWDLEGTQQSGTIKPLQTGYRLAQYNLIANQTPWLYWYGIDNSDGSALIVSQTNLPFISHIDNPYAPTFDLAFEIPRLVYYNAVNASGSTITYTNNNLFNKYWKNYVNETVSKEALQLELTMMLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLADFVPVTDVPIANDPAFLYNGPITSDPTDPNYE
Ga0228703_10176422	F068753	N/A	IELVRSGQVWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQLEVAIAYKNNIL

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