NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F068753

Metagenome Family F068753

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F068753
Family Type Metagenome
Number of Sequences 124
Average Sequence Length 45 residues
Representative Sequence VWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Number of Associated Samples 95
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.47 %
% of genes near scaffold ends (potentially truncated) 51.61 %
% of genes from short scaffolds (< 2000 bps) 48.39 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (89.516 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(16.129 % of family members)
Environment Ontology (ENVO) Unclassified
(45.161 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(50.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.11%    β-sheet: 33.33%    Coil/Unstructured: 35.56%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF14550Peptidase_S78_2 1.61



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A89.52 %
All OrganismsrootAll Organisms10.48 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002408|B570J29032_109764642All Organisms → Viruses → Predicted Viral1247Open in IMG/M
3300002408|B570J29032_109821477Not Available1474Open in IMG/M
3300002835|B570J40625_100164526All Organisms → Viruses → Predicted Viral2493Open in IMG/M
3300005527|Ga0068876_10419833Not Available744Open in IMG/M
3300005581|Ga0049081_10187849Not Available745Open in IMG/M
3300005581|Ga0049081_10212290Not Available690Open in IMG/M
3300006005|Ga0073910_1013425Not Available563Open in IMG/M
3300006030|Ga0075470_10129808Not Available743Open in IMG/M
3300006641|Ga0075471_10056453All Organisms → Viruses → Predicted Viral2172Open in IMG/M
3300006917|Ga0075472_10333561Not Available749Open in IMG/M
3300007547|Ga0102875_1112487Not Available866Open in IMG/M
3300008113|Ga0114346_1193997Not Available818Open in IMG/M
3300008117|Ga0114351_1310896Not Available737Open in IMG/M
3300008266|Ga0114363_1090378Not Available1121Open in IMG/M
3300008266|Ga0114363_1108196Not Available988Open in IMG/M
3300008266|Ga0114363_1189088Not Available644Open in IMG/M
3300008450|Ga0114880_1099827Not Available1124Open in IMG/M
3300009068|Ga0114973_10705229Not Available513Open in IMG/M
3300009146|Ga0105091_10744317Not Available517Open in IMG/M
3300010354|Ga0129333_11630124Not Available526Open in IMG/M
3300012017|Ga0153801_1064300Not Available645Open in IMG/M
3300012666|Ga0157498_1042183Not Available700Open in IMG/M
(restricted) 3300013122|Ga0172374_1177116Not Available779Open in IMG/M
(restricted) 3300013130|Ga0172363_11040898Not Available504Open in IMG/M
3300013372|Ga0177922_10146397All Organisms → Viruses → Predicted Viral2402Open in IMG/M
3300013372|Ga0177922_11157715Not Available625Open in IMG/M
3300017716|Ga0181350_1146466Not Available553Open in IMG/M
3300017785|Ga0181355_1194646Not Available799Open in IMG/M
3300018420|Ga0181563_10583551Not Available623Open in IMG/M
3300019784|Ga0181359_1121996Not Available931Open in IMG/M
3300020183|Ga0194115_10436793Not Available552Open in IMG/M
3300020527|Ga0208232_1005493All Organisms → Viruses → Predicted Viral2096Open in IMG/M
3300020539|Ga0207941_1017411All Organisms → Viruses → Predicted Viral1094Open in IMG/M
3300021962|Ga0222713_10602006Not Available641Open in IMG/M
3300021962|Ga0222713_10619728Not Available628Open in IMG/M
3300022747|Ga0228703_1017642All Organisms → Viruses → Predicted Viral2382Open in IMG/M
3300025445|Ga0208424_1002691All Organisms → Viruses → Predicted Viral1990Open in IMG/M
3300025445|Ga0208424_1025693Not Available699Open in IMG/M
3300025585|Ga0208546_1082298Not Available735Open in IMG/M
3300025872|Ga0208783_10253241Not Available712Open in IMG/M
3300027142|Ga0255065_1053302Not Available718Open in IMG/M
3300027366|Ga0208556_1090642Not Available559Open in IMG/M
3300027492|Ga0255093_1071403Not Available655Open in IMG/M
(restricted) 3300027730|Ga0247833_1216038Not Available705Open in IMG/M
3300027743|Ga0209593_10057504All Organisms → Viruses → Predicted Viral1484Open in IMG/M
3300027760|Ga0209598_10191674Not Available871Open in IMG/M
3300027805|Ga0209229_10364793Not Available630Open in IMG/M
3300027816|Ga0209990_10011453Not Available5437Open in IMG/M
(restricted) 3300027970|Ga0247837_1051050All Organisms → Viruses → Predicted Viral2462Open in IMG/M
3300027975|Ga0209391_10396874Not Available530Open in IMG/M
3300031758|Ga0315907_10102064All Organisms → Viruses → Predicted Viral2458Open in IMG/M
3300031758|Ga0315907_10863418Not Available668Open in IMG/M
3300031786|Ga0315908_10818895Not Available760Open in IMG/M
3300031857|Ga0315909_10282607All Organisms → Viruses → Predicted Viral1252Open in IMG/M
3300031951|Ga0315904_10789752Not Available783Open in IMG/M
3300031951|Ga0315904_10813854Not Available767Open in IMG/M
3300031951|Ga0315904_11114421Not Available614Open in IMG/M
3300031951|Ga0315904_11312891Not Available546Open in IMG/M
3300031963|Ga0315901_11237782Not Available503Open in IMG/M
3300032050|Ga0315906_10635207Not Available871Open in IMG/M
3300032116|Ga0315903_11004415Not Available583Open in IMG/M
3300033993|Ga0334994_0116127Not Available1550Open in IMG/M
3300034062|Ga0334995_0194233All Organisms → Viruses → Predicted Viral1417Open in IMG/M
3300034062|Ga0334995_0595244Not Available643Open in IMG/M
3300034062|Ga0334995_0775422Not Available528Open in IMG/M
3300034092|Ga0335010_0530012Not Available612Open in IMG/M
3300034101|Ga0335027_0874071Not Available513Open in IMG/M
3300034118|Ga0335053_0393534Not Available843Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous16.13%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater15.32%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater12.90%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater5.65%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake5.65%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton5.65%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake5.65%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.84%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment4.03%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.03%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic2.42%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.42%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.42%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment1.61%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater1.61%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment1.61%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.61%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.61%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.81%
Freshwater, Surface IceEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice0.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater0.81%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.81%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.81%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand0.81%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000736Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011EnvironmentalOpen in IMG/M
3300001282Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnionEnvironmentalOpen in IMG/M
3300002385Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnionEnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300006005Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_25-Nov-14EnvironmentalOpen in IMG/M
3300006030Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006641Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006863Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNAEnvironmentalOpen in IMG/M
3300006875Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006917Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300007094Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007363Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNAEnvironmentalOpen in IMG/M
3300007547Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02EnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008117Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009075Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015EnvironmentalOpen in IMG/M
3300009146Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300011995Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 880 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012017Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300012666Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2EnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013122 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3mEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013129 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cmEnvironmentalOpen in IMG/M
3300013130 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2EnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300014720 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35mEnvironmentalOpen in IMG/M
3300017716Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.DEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300017785Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300020200Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50mEnvironmentalOpen in IMG/M
3300020214Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80mEnvironmentalOpen in IMG/M
3300020527Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020530Freshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020539Freshwater microbial communities from Lake Mendota, WI - 13SEP2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020551Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)EnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022747Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MGEnvironmentalOpen in IMG/M
3300025445Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025585Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025848Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025872Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027142Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_0hEnvironmentalOpen in IMG/M
3300027259Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027366Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027492Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8dEnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027720Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)EnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027743Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027760Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300027816Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027970 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5mEnvironmentalOpen in IMG/M
3300027971Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027975Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300028559 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_1mEnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031786Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032092Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034092Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034118Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165EnvironmentalOpen in IMG/M
3300034122Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI12547J11936_100281853300000736Freshwater And SedimentGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
B570J14230_1002237513300001282FreshwaterLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
B570J29615_10820823300002385FreshwaterDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
B570J29032_10976464213300002408FreshwaterVRSGQVWLELDGQLVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNSIL*
B570J29032_10982147713300002408FreshwaterVRSGQVWLELDGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL*
B570J40625_10016452623300002835FreshwaterSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAIAYKNNIL*
Ga0068876_1041983323300005527Freshwater LakeLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL*
Ga0049081_1018784923300005581Freshwater LenticLVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNSIL*
Ga0049081_1021229013300005581Freshwater LenticLELDGQLVEAVVNANQYQFVTRRNDQLQQLQLEVAIAYKNNIL*
Ga0073910_101342513300006005SandIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0075470_1012980813300006030AqueousELVRSGQVWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQVEIAVAYKNNIL*
Ga0075471_1005645323300006641AqueousLVEAVVNANQYQFVTRRNDQLQQLQLEVAVAYKNNIL*
Ga0075471_1038014113300006641AqueousLDGQLVEAVVNANSYQFVTRRNDQLQQLQVEIAVAYKNNIL*
Ga0070749_1006967133300006802AqueousDGQLVEAVVNANQYQFVTRRNDQLQQLQLEVAVAYKNNIL*
Ga0075459_102804523300006863AqueousGQVWLELDGQLVEAVVNANQYQFVTRRNDQLQQLQLEVAVAYKNNIL*
Ga0075473_1030725913300006875AqueousVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0075473_1040714223300006875AqueousELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0075473_1044462223300006875AqueousLVEAVVNANSYQFVTRRNDQLQQLQIEIAVAYKNNIL*
Ga0075472_1033356113300006917AqueousIELVRSGQVWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQVEIAVAYKNNIL*
Ga0102532_118398213300007094Freshwater LakeLDGQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL*
Ga0070753_132603613300007346AqueousGQLMEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0075458_1003777023300007363AqueousRSGQVWLELDGQLVEAVVNANQYQFVTRRNDQLQQLQIEIAVAYKNNIL*
Ga0075458_1007815423300007363AqueousQVWLELDGQLVEAVVNANQYQFVTRRNDQLQQLQLEVAVAYKNNIL*
Ga0102875_111248713300007547EstuarineELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL*
Ga0105746_131525413300007973Estuary WaterVWLELDGQLVEAIVHANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0114346_119399723300008113Freshwater, PlanktonGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL*
Ga0114351_131089613300008117Freshwater, PlanktonEMVRSGQVWLELDGQLVEAIVNVNTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0114363_107860423300008266Freshwater, PlanktonQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0114363_109037823300008266Freshwater, PlanktonSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL*
Ga0114363_110448013300008266Freshwater, PlanktonLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0114363_110819613300008266Freshwater, PlanktonMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0114363_118908823300008266Freshwater, PlanktonEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0114880_109982723300008450Freshwater LakeRSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL*
Ga0114973_1070522923300009068Freshwater LakeWLIEMVRSGQVWLELDGQLVEAMVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0105090_1046554123300009075Freshwater SedimentSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0105091_1074431713300009146Freshwater SedimentVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQIEVSLAYKNNIL*
Ga0105104_1013563113300009168Freshwater SedimentQVWLELDGQLVEAIVNANTYQLTTRRNDRLTQLQIEVSLAYKNNIL*
Ga0114974_1021490423300009183Freshwater LakeWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0114974_1047805023300009183Freshwater LakeEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
Ga0129333_1163012423300010354Freshwater To Marine Saline GradientSEWLIELVRSGQVWLEIDSQLVEAVVNANQYQFVTRRNDQLQQLQIEIAVAYKNNIL*
Ga0129336_1005579223300010370Freshwater To Marine Saline GradientVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNSIL*
Ga0153800_100567723300011995FreshwaterVRSGQVWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQIEIAVAYKNNIL*
Ga0153799_109521823300012012FreshwaterWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQIEIAVAYKNNIL*
Ga0153801_106430013300012017FreshwaterEWLIELVRSGQVWLELDGQLVEAVVNANQYQFVTRRNDQLQQLQLEVAIAYKNNIL*
Ga0157498_104218323300012666Freshwater, Surface IceSGYVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL*
Ga0164292_1033088913300013005FreshwaterRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL*
(restricted) Ga0172374_117711613300013122FreshwaterSQVWLELDGDLVEAVVNANQYQFVTRRNDQLQQLQIEIALAYKNNIL*
(restricted) Ga0172367_1058249913300013126FreshwaterWLELDGDLVEAVVNANQYQFVTRRNDQLQQLQIEIALAYKNNIL*
(restricted) Ga0172364_1081261413300013129SedimentELDGTLVEAVVNANQYQFVTRRNDQLQQLQIEIAVAYKNNIL*
(restricted) Ga0172363_1104089823300013130SedimentGQLEPLEAVVNANQYQFVTRRNDQLQQLQIEIALAYKNNIL*
(restricted) Ga0172372_1094159013300013132FreshwaterSQVWLELDGQLEPLEAVVNANQYQFVTRRNDQLQQLQIEIALAYKNNIL*
(restricted) Ga0172372_1095400613300013132FreshwaterQVWLELDGQLEPLEAVVNANQYQFVTRRNDQLQQLQIEIAVAYKNNIL*
Ga0177922_1014639723300013372FreshwaterIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAIAYKNNIL*
Ga0177922_1115771523300013372FreshwaterVEAVVNANSYQFVTRRNDQLQQLQIEIAVAYKNNIL*
Ga0177922_1120691413300013372FreshwaterGQVWLELDGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL*
(restricted) Ga0172376_1080074523300014720FreshwaterEAVVNANQYQFVTRRNDQLQQLQIEIALAYKNNIL*
Ga0181350_114646613300017716Freshwater LakeKGMNAWLIEMIRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0181349_103611123300017778Freshwater LakeGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAIAYKNNIL
Ga0181348_121732413300017784Freshwater LakeMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVA
Ga0181355_119464623300017785Freshwater LakeQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL
Ga0181563_1058355123300018420Salt MarshELDGQLVEAVVNANSYQFVTRRNDQLQQLQLEVAVAYKNNIL
Ga0181359_112199623300019784Freshwater LakeWLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0194115_1043679323300020183Freshwater LakeLIELLRSSQVWLEIDGDLVEAVVNTNTYQFVTRRNDQLQQLQLEVAVAYKNNIL
Ga0194121_1056189213300020200Freshwater LakeIELLRSSQVWLEIDGDLVEAVVNTNTYQFVTRRNDQLQQLQLEIAVAYKNNIL
Ga0194132_1056387123300020214Freshwater LakeLVEAVVNTNTYQFVTRRNDQLQQLQLEIAVAYKNNIL
Ga0208232_100549323300020527FreshwaterSAWLIEMIRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0208235_100702623300020530FreshwaterDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0207941_101741123300020539FreshwaterRSGYVWLELNGQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL
Ga0208360_104371313300020551FreshwaterELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL
Ga0222713_1060200613300021962Estuarine WaterESEWLIELVRSGQVWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQLEVAIAYKNNIL
Ga0222713_1061972823300021962Estuarine WaterYGQLVEAVVNANQYQFVTRRNDQLQQLQIEIAVAYKNNIL
Ga0222712_1015456223300021963Estuarine WaterQLVEAVVNANQYQFVTRRNDQLQQLQLEVAIAYKNNIL
Ga0228703_101764223300022747FreshwaterIELVRSGQVWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQLEVAIAYKNNIL
Ga0208424_100269113300025445AqueousSGQVWLELDGQLVEAVVNANQYQFVTRRNDQLQQLQLEVAVAYKNNIL
Ga0208424_102569313300025445AqueousLEIDGQLVEAVVNANQYQFVTRRNDQLQQLQIEIAVAYKNNIL
Ga0208546_104788313300025585AqueousDGQLVEAVVNANQYQFVTRRNDQLQQLQLEVAVAYKNNIL
Ga0208546_108229823300025585AqueousGQVWLELDGQLVEAVVNANSYQFVTRRNDQLQQLQVEIAVAYKNNIL
Ga0208542_118430723300025818AqueousGQLVEAVVNANSYQFVTRRNDQLQQLQLEVAIAYKNNIL
Ga0208005_127047313300025848AqueousLVEAVVNANSYQFVTRRNDQLQQLQIEIAVAYKNNIL
Ga0208783_1025324123300025872AqueousDGQLVEAVVNANSYQFVTRRNDQLQQLQVEIAVAYKNNIL
Ga0208644_122854913300025889AqueousGQLVEAVVNANQYQFVTRRNDQLQQLQLEVAVAYKNNIL
Ga0255065_105330223300027142FreshwaterDGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0208178_105257613300027259EstuarineVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0208556_109064223300027366EstuarineMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
Ga0255093_107140313300027492FreshwaterGQLVEAVVNANQYQFVTRRNDQLQQLQLEVAIAYKNNIL
Ga0208974_117864813300027608Freshwater LenticGEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0209617_1001726813300027720Freshwater And SedimentGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
(restricted) Ga0247833_121603813300027730FreshwaterGTLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL
Ga0209593_1005750413300027743Freshwater SedimentEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0209296_126862423300027759Freshwater LakeGQVWLELDGQLVEAIVNSNTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0209598_1019167413300027760Freshwater LakeWLIEMVRSGQVWLELDGQLVEAMVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0209088_1012350723300027763Freshwater LakeLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0209229_1036479323300027805Freshwater And SedimentQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0209990_1001145313300027816Freshwater LakeVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
(restricted) Ga0247837_105105023300027970FreshwaterLGGTLVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNSIL
Ga0209401_133123823300027971Freshwater LakeVEAIVNSNTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0209391_1039687413300027975Freshwater SedimentQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
(restricted) Ga0247831_125411613300028559FreshwaterGTLVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNSIL
Ga0315907_1010206433300031758FreshwaterGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0315907_1046161013300031758FreshwaterLDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0315907_1086341813300031758FreshwaterYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNSIL
Ga0315908_1081889513300031786FreshwaterVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
Ga0315909_1028260713300031857FreshwaterVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL
Ga0315904_1078975223300031951FreshwaterQLVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNNIL
Ga0315904_1081385423300031951FreshwaterGQLVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNSIL
Ga0315904_1111442113300031951FreshwaterSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0315904_1119651913300031951FreshwaterLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNSIL
Ga0315904_1131289113300031951FreshwaterRSGYVWLELNGTLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL
Ga0315901_1107278223300031963FreshwaterVEAIVNANTYQFTTRRNDRLTQLQVEVAIAYKNNIL
Ga0315901_1123778213300031963FreshwaterLIEMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0315906_1063520713300032050FreshwaterLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL
Ga0315905_1065512723300032092FreshwaterGGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0315903_1093613713300032116FreshwaterWLELNGTLVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNSIL
Ga0315903_1100441513300032116FreshwaterIRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0334994_0116127_1360_15153300033993FreshwaterMVRSGQVWLELDGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL
Ga0334995_0194233_1239_13943300034062FreshwaterMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNSIL
Ga0334995_0595244_2_1543300034062FreshwaterVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0334995_0775422_350_5053300034062FreshwaterMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYENSIL
Ga0335010_0424921_578_7153300034092FreshwaterVWLELGGTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
Ga0335010_0530012_14_1693300034092FreshwaterMVRSGQVWLELDGQLVEAIVNANTYQFTTRRNDRLTQLQIEVAVAYKNNIL
Ga0335027_0367458_2_1333300034101FreshwaterLELDGQLVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL
Ga0335027_0874071_2_1183300034101FreshwaterTLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
Ga0335053_0393534_2_1423300034118FreshwaterYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL
Ga0335060_0092700_1720_18303300034122FreshwaterVEAIVNANTYQFTTRRNDRLTQLQVEVAVAYKNNIL


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