Scaffold Ga0228701

Basic Information
Taxon OID	3300022746 Open in IMG/M
Scaffold ID	Ga0228701_1000832 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022746 Open in IMG/M

Scaffold ID

Ga0228701_1000832 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23116
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (74.42%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

23116

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (74.42%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9255

Long. (^o)

-83.5226

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029734	Metagenome / Metatranscriptome	187	N
F036663	Metagenome / Metatranscriptome	169	N
F053803	Metagenome	140	N
F055673	Metagenome / Metatranscriptome	138	Y
F064418	Metagenome / Metatranscriptome	128	N
F078625	Metagenome / Metatranscriptome	116	Y
F095175	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_10008321	F055673	GGAG	MKVLQKFEQNLEFLGFDMAPVAWDLARFPFESDTDRVALLQELTAREEAPPSGGQPA
Ga0228701_100083223	F064418	N/A	MAKPRPTEIKLVAKLLDPDNSNSEGAAELAIEIIEELDKSRTKRESFIVVAKLADWAPLQAWGEFSTRLQAEKFFPHLSSPDAGGGKGAIARLEHPDDLLKRIGVIK
Ga0228701_100083232	F095175	N/A	MLVADSRTTAGGRPFSHQTVTKITKRGKWLVAGAGDVHPCDVIQHVWKPPVIPANTKDEYHFMITTIAPSIRDCIKESGYVPDKDDPDAGFELLLAVNGTIYQIDDSYSVYLRDDGLYGIGSGSQWALGAMAVGATWKQAMQTAAKNDVYTAPPFIIHRQEKK
Ga0228701_100083237	F053803	AGGA	MAIVILSEDELMDALRFVHRVRENKKQYEVTDRKFDKNNSSYSVNLMGRLGEMAAAQILGLQVDNSITPSGDDGHDLKTILGRTLQVKTSTLPQLIFNAADLFVSDIAILVKFSGDKQLPHVDSEFDVMGWVTREVFLANHYLHDYGYGTRLVMDANQLQPIESLVNEISRL
Ga0228701_10008324	F078625	AGGAG	MFGKQGKPAKAIMGATTVVPKGKPGGKAMGAGNVKQGLTPKGIKGNKNKLK
Ga0228701_100083242	F036663	N/A	MVDTNKLITIVSPDQRSELVTQVRVALNVAGDDLLDAPLAEVLRGLQRRIGIPAVGCINQATLDALAVAPPEW
Ga0228701_10008328	F029734	AGCAGG	MRTVETKTLTAVVKNGVVHVSKPDDKRIFAKVRITTNTAKSSKKIEQILSAFKAYPNFALISSEIAKVEPKAYLTLKGGVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0228701_1000832

Overview

Ecosystem & Geography

Associated Families

Sequences