Scaffold Ga0214478_102125

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214478_102125

Scaffold Ga0214478_102125

Overview

Basic Information
Taxon OID	3300022735 Open in IMG/M
Scaffold ID	Ga0214478_102125 Open in IMG/M
Source Dataset Name	Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellD7
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8491
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.746	Long. (^o)	-122.0257	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094948	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214478_10212510	F094948	AGG	MTAAWVFYCHCRIVHVSSSPETITAWVGVANCWRADLEILPQSEVRCRPTHGCKSATSTSTKVLQVIINLLGT

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