Scaffold Ga0224566_100013

Overview

Basic Information

• Taxon OID: 3300022728
• Scaffold ID: Ga0224566_100013
• Source Dataset Name: Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10931
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.044
  • Long. (^o): 13.617

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004553	Metagenome / Metatranscriptome	433	Y
F006328	Metagenome / Metatranscriptome	376	Y
F014644	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224566_10001311	F006328	GGA	VRAETRHQLKQDAFSRVTIGAAEKTAHWSVEHRNTLIAAVIVAVVIVAAIAGGWYYLSAQNEKASLDLTQAVRT
Ga0224566_1000135	F014644	N/A	MDKKQINSPKMTLNFLIWVGGVFMLSIFALLGHFVWRIF
Ga0224566_1000139	F004553	AGGAG	LIQRIGKAAIAAIMVAALSWLVTIPVAHADDRSRCQHAVEKAEVRLDKAIHDKGDHSRDADDRRRDLNAERQHCWDQYHQWWNGKEHRWETERTW