NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248483_165902

Scaffold Ga0248483_165902


Overview

Basic Information
Taxon OID3300022691 Open in IMG/M
Scaffold IDGa0248483_165902 Open in IMG/M
Source Dataset NameSoil microbial communities from Calhoun CZO, South Carolina, United States - 60cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1135
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Cross-Czo Soil Depth Profiles

Source Dataset Sampling Location
Location NameUSA: South Carolina
CoordinatesLat. (o)34.6074Long. (o)-81.7228Alt. (m)Depth (m).6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104094Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0248483_1659022F104094AGGAGGMADNSKRRDKPWRPGDYPPLGPSWDQADPTENAEPQGVPDAED

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