Scaffold Ga0248169_133499

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_133499
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2655
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027373	Metagenome	194	N
F033290	Metagenome	177	Y
F050052	Metagenome	145	N
F091244	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_1334991	F091244	AGGAG	MTDEEIIAKILANQWWPFDRVDPRILQEIQRRDRQQM
Ga0248169_13349910	F033290	GGA	MTKDEMIELAKQAGWQYAHGESGYEALWAFGKLVAEKEREACAEICDGFYLSWIDIQGRYEFMGEGASECAGAIRARGQE
Ga0248169_1334997	F050052	GGA	MIYKTFKQWVKGRFLETGEPRKKAYSKDERALIEMGWGYGYDAGVLVEREQCAQIADEWSVAYPHPSKTIAETIRKRGQE
Ga0248169_1334999	F027373	GGA	MTEQKTGFTIYKPPKPVGYWCLYGGGHTTKFAMYAKPTNEQIKNTTELLGWIWEDA