NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_100587

Scaffold Ga0248169_100587


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100587 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56793
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (93.90%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010743Metagenome / Metatranscriptome299Y
F032114Metagenome / Metatranscriptome180N
F062234Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0248169_1005872F062234GGAGMRQWIVRHERDGDNISALWESDNGDRWYVQVVINGEVQW
Ga0248169_10058734F010743GAGGMENLELELKLTVAHVNTVLKHLGAGVYAEVADLIQILHGQAKPQIESAAVAPAPVEAVPTEEQPAQ
Ga0248169_1005874F032114GGAGMIHFLGGMQSITTTYLVWSRYKTASMPDWEWVNDLPDGVSQVAHWVIKRITK

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