Scaffold Ga0248169_100454

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_100454
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64723
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (78.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F030989	Metagenome / Metatranscriptome	183	Y
F034813	Metagenome	173	Y
F068426	Metagenome	124	Y
F085161	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_100454100	F068426	N/A	MVCLIKENMEKWSFVISELKSLQQGFEDHQAITELFVEQKLLCGYNIIKSKDQVHYA
Ga0248169_100454101	F006060	GAG	MNHFSKAKVGDIIRAFDFKPMAGRDDAFVEGVVEEVNCTEPGYNCFKITVTADKFEKYETTPHKENRVGRIVFVPHQVSFMEYAGRIINLS
Ga0248169_100454104	F034813	GGCGG	MSYDADFESVYMVEFESGRTIHVQFFDVQEVKEYCADNHAGDVIKSIYKEVYCNFAEAE
Ga0248169_100454115	F030989	AGG	MKYIAKPKLFNNTGMKEFDDAREAILYLNKVLSDSDVNPALDYTFIAPKASPKQLKHAIEEYVGIGKLICVA
Ga0248169_10045498	F085161	GAG	MEIYIVKSFGPENGWVNLKAFDNNDAAVSFANEIEKQIPDGVEDEFVEVECFNLRSW