Basic Information | |
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Taxon OID | 3300022591 Open in IMG/M |
Scaffold ID | Ga0236341_1012005 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Laval University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2979 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter |
Source Dataset Sampling Location | ||||||||
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Location Name | SAS2a, Kuujjuarapick, Canada | |||||||
Coordinates | Lat. (o) | 55.1491 | Long. (o) | -77.4866 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006506 | Metagenome / Metatranscriptome | 371 | Y |
F010472 | Metagenome | 303 | Y |
F041185 | Metagenome / Metatranscriptome | 160 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0236341_10120051 | F041185 | N/A | GVQYAFPAGAKELQPGTEWPVNFGAFTPAKRNKCGANASAD |
Ga0236341_10120054 | F006506 | GGAG | MKKLLVVLGFVSLTGCASIMELLPSRWDANQSKAITDIQLEARSLDCKAELAPQVNKLAQDVEWFDIYAKTKPTRDIAKLTGTLTTTVKELQDRVKAGSVSPLYCDLKKKIIQQQADILAGSVQGRF |
Ga0236341_10120055 | F010472 | GGAG | MSQVLHDLIAGGSWAAERAQYALEVNEAVKNGQLSPSEAKEILADLIATDKLDEAATDQQARAMLVFGVTHLISFY |
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