NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1001833

Scaffold Ga0236341_1001833


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1001833 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11433
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (90.32%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F005705Metagenome / Metatranscriptome392Y
F013757Metagenome / Metatranscriptome268Y
F029335Metagenome / Metatranscriptome188Y
F052344Metagenome / Metatranscriptome142Y
F083613Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_100183311F052344N/AMFLQYEVWGITDEHEELIEVVPTLKEAEEIAGAEQEFCDEVYILEDKDGDIREVKRYQGL
Ga0236341_100183319F005705AGGAGMKIVVKIPHKTRAHLVLFCADTPFKQKVVESKIKYKRQAKHKGKRDE
Ga0236341_100183321F000652GAGMTGFNSKRAMAQDKLKEPGMKRVIVETLITQELEVPASWDRYDVYDFLAEYQSFRTAFQGVSNTDQTARIVDLGVVEETVTEMGEEAFDE
Ga0236341_100183324F083613GGAGMGYFTDTDFDSTLDMIDCVNEVVERHVRGMDRMTADKLGLDIRAGRVYVDLAEEVIAVDCTRSIDYYGGFEYIKEGEGRTTCGGYTFFNTESSRVQECFDYMNETEVADES
Ga0236341_100183325F029335AGGAGMRTITTMNNGNIYQMDITEAIEIVEAYKRVNGHPGMLEAVMDMADRVALDELPNIQKVAYRRFMRDMEQLFAPVDA
Ga0236341_100183329F013757AGGAMLTQCIAKAKLVYNKRLQSYKLVVAFNAHKRIVKKGTTEVVKYSFPTQAKCAYVSGDLLAKNLQAELASVMPSVYKTLRTNSVEFVE
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